BtaINT0060333 @ bosTau6
Intron Retention
Gene
ENSBTAG00000031044 | FAM73A
Description
family with sequence similarity 73, member A [Source:HGNC Symbol;Acc:HGNC:24741]
Coordinates
chr3:67075923-67076361:-
Coord C1 exon
chr3:67076243-67076361
Coord A exon
chr3:67075996-67076242
Coord C2 exon
chr3:67075923-67075995
Length
247 bp
Sequences
Splice sites
5' ss Seq
TAGGTATCA
5' ss Score
3.86
3' ss Seq
CTCCCCTGTTTATTACTTAGAAC
3' ss Score
7.67
Exon sequences
Seq C1 exon
CTTGCAGAGCACAAAGAAGCGCGGCATACCTACAGCCTGGAGTCCCTTTGCCACTGTCCTTTTTACGAAGAGGCCATGCGCTTAGTTGAAGAAGGAAAAATTTACTCAAGAGTGCTTAG
Seq A exon
GTATCAGGCTTATGTTTATGAAAAATATTAAGATGCTGTTGATATGTTTGTCTGATATTTGTTTAAAATATTTATGAGAATAGGGGGAAAATGTTTTTAGGCACAAAACAATTTTTTTATGTATTTTGTCAGTATTGAAAAGGCATGTGTTTTTTATTAAGGTCCTGAGGTTAAGCCTTATTCCAGACTTGTAGTAGGCTTGATCTTAAATGCACTTTAACAGTTGTCTCCCCTGTTTATTACTTAG
Seq C2 exon
AACTGAAATGTTGGAGTGCCTAGGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACAGGCTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031044:ENSBTAT00000043938:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.1=100)
A:
NA
C2:
PF102654=DUF2217=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCAGAGCACAAAGAAGCG
R:
TGTCGAATACAGTGAAGTTTGGCA
Band lengths:
182-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]