GgaINT0039128 @ galGal3
Intron Retention
Gene
ENSGALG00000008951 | FAM73A
Description
NA
Coordinates
chr8:19651064-19651417:-
Coord C1 exon
chr8:19651299-19651417
Coord A exon
chr8:19651137-19651298
Coord C2 exon
chr8:19651064-19651136
Length
162 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
ATTTCTTTTATTTTTCATAGGAC
3' ss Score
9.75
Exon sequences
Seq C1 exon
CTTACAGAGCATAGAGAAGCTCGTAATACCTACGGTCTAGATTCCCTTTGCCATTGTCCACTGTATGAAGAAGCAATGCACTTAGCAGAAGAAGGCAAAATTTATTCACGAGTCTTAAG
Seq A exon
GTATTAATGTATTGATTTGTCTACTTAATAACTTGCAAGAAAATAAAACAGTAAAGTTAAATATTCTGTGCAGAATGCAGGATTCTCATAGTGGGTATTCTTTAGTTGATTTTTCTCGTGCTTCTTTATTTGATGTCTTTGAATTTCTTTTATTTTTCATAG
Seq C2 exon
GACTGAAATGTTTGAATGTCTCGGAGACAGTGACTTCCTTGCTAAGCTCCATTGTATTCGACAAGCTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008951:ENSGALT00000014556:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.1=100)
A:
NA
C2:
PF102654=DUF2217=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGCATAGAGAAGCTCGT
R:
TGGAAAGCTTGTCGAATACAATGGA
Band lengths:
188-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]