DreINT0066863 @ danRer10
Intron Retention
Gene
ENSDARG00000020596 | fam73a
Description
family with sequence similarity 73, member A [Source:ZFIN;Acc:ZDB-GENE-041010-193]
Coordinates
chr2:8873825-8874120:-
Coord C1 exon
chr2:8874002-8874120
Coord A exon
chr2:8873898-8874001
Coord C2 exon
chr2:8873825-8873897
Length
104 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
AGCCTTTCTTTTAAAATCAGAAC
3' ss Score
4.56
Exon sequences
Seq C1 exon
TTATCTGAGCACAGAGAGATGAGGAGTGGTCATGCGCTGGGGTCACTGTGTCCTCACCCCTTCTATGAGGATGCCCTGCAGATGGCTGAAGAGGGGAAGATCTCCTGTCGAGTGCTACG
Seq A exon
GTGAGTTCAGTAGCTCAACGATGAGGTATATTAATCAGTGTGCAGATGAATAGCCAAGTAACTGCTGGGTGCTCTCATTGTAATAGCCTTTCTTTTAAAATCAG
Seq C2 exon
AACAGAAATGCTTGAATGTCTTGGAGACGCCGATTTCCTGGCGAAGCTGCACTGTGTACGGCAGGCATGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020596:ENSDART00000010257:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.2=100)
A:
NA
C2:
PF102654=DUF2217=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCACAGAGAGATGAGGAGT
R:
CTGACATGCCTGCCGTACAC
Band lengths:
187-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]