RnoINT0092518 @ rn6
Intron Retention
Gene
ENSRNOG00000056332 | Miga1
Description
mitoguardin 1 [Source:RGD Symbol;Acc:1559958]
Coordinates
chr2:257507246-257507487:-
Coord C1 exon
chr2:257507357-257507487
Coord A exon
chr2:257507280-257507356
Coord C2 exon
chr2:257507246-257507279
Length
77 bp
Sequences
Splice sites
5' ss Seq
CAGCTTAGC
5' ss Score
-3.38
3' ss Seq
TAAGAACAAAACTCGCTTAGAGA
3' ss Score
-2.44
Exon sequences
Seq C1 exon
CTTGCAGAGCACAGAGAAGCACAGCAAGCCCTCAGCCTGGAGTCTTTTTGTCGCTGCCCTTTTTACGAAGAAGCTATGCATCTGGTGGAAGAAGGGAAAATTCACTCCAGAGTACTGAGGTATCGCTCCAG
Seq A exon
CTTAGCTTACCACGAGTGTCTGTGAGACTGTGATTTATCTTCAGTTAGAGAAACTAGTAAGAACAAAACTCGCTTAG
Seq C2 exon
AGAATGTATTTACCTTCGGGCTTTCACAATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056332:ENSRNOT00000089370:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(7.9=100)
A:
NA
C2:
PF102654=DUF2217=FE(2.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]