BtaINT0060811 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010743 | FASTKD1
Description
Bos taurus FAST kinase domains 1 (FASTKD1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102031]
Coordinates
chr2:26751813-26754333:+
Coord C1 exon
chr2:26751813-26751938
Coord A exon
chr2:26751939-26753934
Coord C2 exon
chr2:26753935-26754333
Length
1996 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
GCATCTTCTTCCTCTTTCAGGTC
3' ss Score
13.02
Exon sequences
Seq C1 exon
GTTTGATATCAGTGTGCTGTCAAAATTTTCCTCTTGCCTGGCAGATCAACATTTATATTATAGTCCATTAATGGGAAAAATAGCTGATATCGTAAATAGGAACTTGGAAAACATACAGGACTTAAG
Seq A exon
GTAAGTTTATTTAGGGGCTTTGTGTCGTGGTGGAAAGAGTCTGGGCTTTGAGTGCACACACACTTAGACTTGCTAGTTCCTAACTATGTGACTATTCTCTTGCAAGTTCACGGTCCTCACCTACAAAACAGGAATAGTAAGTAGTATCTACTGTGCAATGTTGCTATGGGAATTAGACATAAAATATGTAAACTATGACACAACGTTGTTGAGCTCTGTGATTTTTCCTTACTTGCAAGCTGACATGTTTGCTGGCCATCCTTACGACCTCATTTAACCTTAAGTTACCTCCCTATCTCTAAATATAGTCACATTGCCAGTGGGGCTTTAACGTATATATTTGTGGGGAGAGGGCATAGTTTGGTTTGTAGCCTACATCAGTGTTCATAGTAACATTAGTCACATTAGCTGAAGGGAGGAAACAACCTAAATGTCCATCAGCAAATGAATGGACAATCAAAATTTTGTATATACCCACAATGGAGTATCATTCAACCTTAAAAAAGGAAGGAAATCCTGATATGTCCTACAACATGTATAAACCCTGAAGACATTATGCCAAGTGAAATAAGCCAGACACAGAAGGACAGATACTGTATGAATCCCCTTCATATGAGGTACCTCGAGTAGTCAAATTCATAGAAACAAAGTAGAATGGTAGTTGCCAGCTGTTGAAGGAGGGGAGAATGGGGAGCTACTATTAACAGGCAAGAAGTTTTAGTTTGAGAAGATGAAGAAGCCCTGCAGTGGATGATGGTGATGGTTGTACAGCAATGTGAATGTACTTAACAACACTGAACTGTATACTTAAAAGTGTTTAAAATGGTGAATTTTACTTTATATATATTTTCACATACACATGAAAGTAGCTCATAAAAGCAAAGATAATAAAAATCACTGTAAATTTTTTTAACTTTAAAAAATTCTTATAGACCCATTTGAGAATCTAATGAAATCTTTGGGTACTTCCCCACTCCAAATTGTGATTATAAATACAATTTAAAAAATCATATCCAAGTTTATAACTAAACTAAATAGCAGCACTAGGTTACTAATTTACGTTAATTGATGTTAACATTAAACATTTGGATTAGAGAAGCTGAAGTATTATACAACTGAGTTTTTAAAAAATAATTTGTTTTATTGGAAAGAGTGAAGAAATTTTGAAACAAAAAACCTCAAATAGTTCCACTAATTGAGATAGTGGAATGGTTGAGATAGTATTAGATTCACATTTTCATGTCTTTTTTGTAGATGTTTTCTAATTATCATCCCCACATGTTTGTTACATCATACCTTTTACATTTTACATTCCTTATTCATTATTAGGTGTATTCTTGTATGTAGAGTTTTGTGATTTTTGTATCATGTAAGAACTGTCTCCTTTTGAAAGGAGAGATCTCACCTTCGTAATTTTGGTGTCTTCCACAGTGCCAGAAGATTGATTTATGTTTCTTAAAAGTGTTTATTGAGTGAAGAAATATGTTTATTGAACATATTCATATTCAATATTGCCCTACTGTTATATATCAATATCAATATAGCATAAAACATTAACAATATGAAATCATTTATTAGTGAGAAATATTTTGCCAATATTTTTACTGGTAGATTATAAATACAGAGGAAGGAGTAATAAAGCAAAGTCTACTTCTGAAAATATAGAATGAGACCTTCTGTGTTGCATTCAATTGGCTGTTGGCACAGAGTGATTTCTGAGTAAACTTCATTAAAATATTTCCCTTCAAAGTATTTATCTATAGAACAAGATATTATACACATTCAACAAAAATTATTATTCAATCCTTTTTTTGTCTACAGGCTTTTGATTACTAGGAGATCAGAATTCAAGTTCCACTAGTATTTAAAAGAAAAATTTTGTTGTATAAAGCCTGTAGTATTTTTATCAATTCCTTTCTGTTTCTAAGCATTTAGTCTTAGAATTTTTCATTATTCTTAGATAATGTAAACCTTTTGCATCTTCTTCCTCTTTCAG
Seq C2 exon
GTCCTTGTCTGTTTTGATGGTCAGCATATCTTCTTTAATATCACGGCGTTTTCAAGAGAAATTAGTGAACAAAGCAGAATTACTTTTTGACACTATGGATTCTTCCCAGGTCAATACTGCAAGAAGAATAGTACAATTTCTTCGAAATATTAAATATAGATATTACCCACTATTAGAAAGGTGTAATAAAGTATTTTTGAGCAATATGAACCATCTTGATTTGGACTCCATCAGTAAAATACTTAGTCTATACTACTCTCTACAGTTTCATAGTTTTGAATTTATTTTAATGACTAAGAAGAGGCTAACAGAAATGATTCCTCTGTTTGACCACCCTGCTAGCTGTGTAAAATTGTTTGTAGCATTGGGACCCATGGCAGGACCTGAAGAAAAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010743:ENSBTAT00000055855:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAATTTTCCTCTTGCCTGGC
R:
ACTGATGGAGTCCAAATCAAGATGG
Band lengths:
342-2338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]