GgaINT0046199 @ galGal4
Intron Retention
Gene
ENSGALG00000009841 | FASTKD1
Description
FAST kinase domains 1 [Source:HGNC Symbol;Acc:HGNC:26150]
Coordinates
chr7:18145928-18147308:+
Coord C1 exon
chr7:18145928-18146053
Coord A exon
chr7:18146054-18146915
Coord C2 exon
chr7:18146916-18147308
Length
862 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
AAGTCTTTTGAATTTTTTAGGAT
3' ss Score
8.17
Exon sequences
Seq C1 exon
CCTTAGTTTACCAGCTTTGTCTAAATTTGCACTGTGTTTACACAAGCAGCACAGACATTTTAGTCCCCTAACTGGCAAAATAGCACATCTTGTGGACATGAAACTGGATTCTATACAGGATATAAG
Seq A exon
GTAAGTGTCAGAGTGAAATTGAGTAGTGTGGGAAACAATATGTCACTGTTTGGGGTGGGTTTTTTTGGTTAAACATTTTCAGTTTTTCTCAACTGAAGGTTAATTCAGTTTGAGGTTTGTGGGAAAAAAAATGTGATTTGTGCATTGGTTTTCATGAAAAAGTTTACTCAGGTTAAAACAATATCAGAGTTGCCTATTTCCCCACCAAACCATGTCCCTTAGTACAAAAGCAGAACCCTAGGCAAAAAAAGCCCAAGCTTATTTTTCTTGCCTTTCTTCTCCCTGGGCCATTGTAGCAGGTGCTGCGCTTTTTTCCCCCGCCTCTTACAGCACCGTCATTCTCCATTTATTTGTTTATTTTCAGGCACACAGAGCCTGCTTATGAAATTATTTGAATAAGACTGCATTTCTTTACACAACTGACTCTCCTTGGTCTGAAGTCATCCTGTTAGGGAGGGATTTTTTTCTTTAGGAATGACGGTGACTCTTCTCCCTGTTCTGTCTCCTGGGAATTGTTTGCATTTCTTTAATTTTTCACTGAAGATTAAAGATCTTTTTGCAAATTGAAATTAGACATGTCAGGAGTTTGCCATAGGCAAGCACTTTTATCACAAACAACTTTGTAAGAGTTGAAAAATCCCAATCATTTCAGTAATTCTCTAAAGGCAGAATTTTTAAGTTATTTGAACAAATGCTTTTTGCTGAGCTATTTTTTGTACATTAGATTCTGAACTCCTTGTGGCACAGAAGCCAGCAACATCCTAACTAACATTCCTTTATTTGGCTAATTTATTTGAGAAGTCTAAAATGTGTTACTTACCCATGTGCAATGTGTAAGCTTAAAGTCTTTTGAATTTTTTAG
Seq C2 exon
GATCTTGTCAGTTTTGATGATCAGCGTATCTGATGTCATCTCACGGAGTTTTCAAGACCGATTACTACAGAAGGTGGATCAGCTACTGGGAGAAGGAGTCCACTTCAACTATGCCAAAAGAATTGTACAGTTTCTTCAACTTAGTAAACTGACACATTCTCCATTGCTAGAAAAGTGCAACAAGATTTTCTTAAAAAGCACCTCTCATCTTGATTTAGACAATATTAGTCTTATTTTTGGACTCTATGAACAGCTGGGTTTTGACAATGCGGAATTCCGCTTGACTGCTAAACAGCTTCTGTCTGAATCAGTAGATGATTATTGTGATCCTGAAGCCTTTGCAAAATTATTTTTTGTTCTTGGGCCTATGGCTGAGTCCAAGGTAAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009841:ENSGALT00000016000:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAAGCAGCACAGACATTT
R:
CGCATTGTCAAAACCCAGCTG
Band lengths:
358-1220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]