MmuINT0062638 @ mm9
Intron Retention
Gene
ENSMUSG00000027086 | Fastkd1
Description
FAST kinase domains 1 [Source:MGI Symbol;Acc:MGI:2444596]
Coordinates
chr2:69545365-69546693:-
Coord C1 exon
chr2:69546568-69546693
Coord A exon
chr2:69545764-69546567
Coord C2 exon
chr2:69545365-69545763
Length
804 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
GTATCTTTTTTCTCCTTCAGGGC
3' ss Score
12.07
Exon sequences
Seq C1 exon
GTTCGATACTAATGTGCTGTCCATATTTTCCACTTGCTTGGCCGATCAGCATCTGTATTTCAGTCCATTAATGGGAAAAATAGCTGATATTGTAAATAGGAGACTGGAAACCATCCAGGACTTAAG
Seq A exon
GTACCTCTATTTGGGAGCATTGTGTGGGCGGGCAGGTGCAGACTTTGGGTGCGGATAGAGATCTGTCCAGCCTCATTATAACCTCGTCTCTTGTGAGCTTATCATCCCATCTATAAAACGTCGATGGCAAAAGCTGCTTGGTATTGTCCAGCTTTCTGAAGCATCTAAGATTTTTTTTTAAAGATTTTATTTATTTATTATATATAAGTACACTCTAGCTATCTTTAGACACACCAGATGAGGGCATCAGATTTCTTTTTTGTGTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAAGCTGGCCTCGAACTCAGAAATCTGCCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGTGTGCGCTGCCTAGCTGAGGGCATCAGATTTCATTACAGATGGTTGTGAGCCACCACATGGTTGCTGCGATTTGAACTCCTGACCTCTGGAAGAGCAGTCAGTGAGTGCTCTTAACTTCTGAGCCATCTCGCCAGCCCCAGCATCTAAGATTTTTAACTCACCAAGTTTGCCTGCCATGTCCCCAGCCATCTGTCACGGCTTTGTGTGTAGCAGCAGACGACATGATATCCCCAGGTCAGAACCAGGGAACTGTTTTTCATGGTGATAGGGGAAAAAAAATGAATAAATGAATGAGACAATTTATGGCATAAAACAATATGCTTGCCAGTTTCTTGCCATATCTAGTCATTTCATTTAGAATTGGTCATTTTTGTTAATGATATCAAAATGTGTATCTTTTTTCTCCTTCAG
Seq C2 exon
GGCCTTATCTGTCTTAATGGTCAGCATTTCTTCATTAATATCACCGTGTTTCCAGGAACGACTGGTGATCAGAACAGAACTTCTTTTTGACACTGTAAATTCTTCCAAAGTCAACATTGCAAGAAGGATATTACTGTTTCTTCGAAATGTCAAATACAGTCATTACCCACTGTTAGAGAGGTGTAATCAAGTGTTTATAAGGAACATGAGCCATCTTGATCTGGAGTCCATCAGTAAAATCCTTAACCTGTATCAGTTTCTACAGTTCCACAGCTTTGAATTTGTTGAAGCAGCTCGAGGGAGGCTGGCTGAGATGACCCTCCCTTCTGATCATCCTGAAAGCTTTGTCCGGTTGTTTGCCGCTCTGGGGCCGGTGGCCAGACCTGAGATAAAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027086-Fastkd1:NM_177244:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTCCATATTTTCCACTTGCT
R:
TGGACTCCAGATCAAGATGGCT
Band lengths:
342-1146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: