RnoINT0059310 @ rn6
Intron Retention
Gene
ENSRNOG00000024335 | Fastkd1
Description
FAST kinase domains 1 [Source:RGD Symbol;Acc:1563531]
Coordinates
chr3:55945555-55946717:-
Coord C1 exon
chr3:55946592-55946717
Coord A exon
chr3:55945954-55946591
Coord C2 exon
chr3:55945555-55945953
Length
638 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
GTATCTTTTTTCTCCTTCAGGGC
3' ss Score
12.07
Exon sequences
Seq C1 exon
GTTCGATATTAATGTGCTGTCAATATTTTCCACTTGCCTGGCCGATCAGCACTTGTATTTTAGTCCATTAATGGGAAAAATAGCTGACATTGTGAATAGGAAACTGGAAGCCATACAGGACTTAAG
Seq A exon
GTACCTCTGGTTGGGAGCGTTGTGTGGGCGTGCAGGTGCAGACTTTGGGTGCAGATAGAGACCTGTGTCAGTCATCATTGTAAATGCATCTCTTGTAAGCTCATCATCCCCATCTGTAAAACAGCGATGGCAAAAGCTGCTTGGTATTGAGCTCTCTGAAGCATCTCAGGTTTTTTTTTTTTTTTTTTTTAAAGATTTATTCATTTATTATATATAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGCATCGGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCATGACCTCTGGAAGAGCAGTCGGGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCGCATCTCAGGTTTTTAACTTACCAAGTTCGCCTGCCATGTCCCCAGCCATCTCTCATGTCTTCGCAAGTAGCAGCAGAAGACATGATATTCCCGAGTCAGAGCCAGACGACTGTTTCTCACGGTGGTAGGGGAAAAAATGAATAAATGGGTGAGACAATTTATGGCATAAAACAATATGCTTGCCACTTTCTTGCCATATCTAGTTATTTAATTTAGAATTGACCATTTTCGTTAGTGATCTCAAGATGCGTATCTTTTTTCTCCTTCAG
Seq C2 exon
GGCCTTGTCTGTCTTGATGGTCAGCATTTCTTCTTTAATATCACCGTGCTTTCAAGAACGACTGCTGACCAGAGCAGAACTTCTTTTTGACACTGTAGATTCTTCCAAGGTCAACATTGCAAGGAGGATACTACTGTTCCTTCGGAATGTCAAGCACAGTCACTACCCACTGTTAGAGAGGTGCAATCAAGTGTTCATCAGAAATGTGAGCCATCTTGACTTGGAGTCCATCAGTCGAATCCTTAGTCTGTATCAGTCTCTACAGTTCCACAGCTTTGAATTTATCGAGGTGGCTCGAGGGAGGCTGGCTGAGCTGAGCCTCCCTTCTGACCATCCTGAAAGCTTCGTCAGACTGTTTGCTGCGCTGGGGCCGGTGGCCAGGCCTGAGATAAGGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024335:ENSRNOT00000036585:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTTTCCACTTGCCTGGCCG
R:
AGGATTCGACTGATGGACTCCA
Band lengths:
346-984
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]