BtaINT0061046 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002278 | FBN1
Description
Bos taurus fibrillin 1 (FBN1), mRNA. [Source:RefSeq mRNA;Acc:NM_174053]
Coordinates
chr10:62115241-62115737:+
Coord C1 exon
chr10:62115241-62115366
Coord A exon
chr10:62115367-62115614
Coord C2 exon
chr10:62115615-62115737
Length
248 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
CTGTGTCTCTTTGATCATAGATC
3' ss Score
8.16
Exon sequences
Seq C1 exon
ATATTGATGAGTGCAAGGTTATTCATGATGTTTGCCGAAATGGGGAATGTGTCAATGACAGAGGATCATATCATTGCATTTGTAAAACTGGCTACACTCCAGATATAACTGGAACTGCCTGTGTAG
Seq A exon
GTAAGTGCTCTATTTCTGATACTCAGGTTTATTCTCGGATGGAAATTGTACATTATGAGAAAAAAACCTTCAAACTAAAACTCTAAAAAGCCTGTGTAATTTCATAAGGAAACGTAAGACAGTGATCAAAGACCATACAATGTACCTTTTCTTTCTTTAAAACTAAGATTCTTTGTTAGACGCTGTGGGTATTGAGCATTGAAACATCTTTTTAGATGGGCAGTCACACTGTGTCTCTTTGATCATAG
Seq C2 exon
ATCTAAATGAGTGCAACCAGGCTCCCAAACCCTGCAATTTCATCTGTAAGAACACAGAAGGGAGTTACCAGTGTTCATGCCCGAAAGGCTACATTCTGCAGGAGGACGGAAGGAGCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002278:ENSBTAT00000002944:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGTGCAAGGTTATTCATGA
R:
CTTTGCAGCTCCTTCCGTCC
Band lengths:
245-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development