RnoINT0059592 @ rn6
Intron Retention
Gene
ENSRNOG00000007302 | Fbn1
Description
fibrillin 1 [Source:RGD Symbol;Acc:620908]
Coordinates
chr3:117581012-117581472:-
Coord C1 exon
chr3:117581347-117581472
Coord A exon
chr3:117581135-117581346
Coord C2 exon
chr3:117581012-117581134
Length
212 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
CTACCTTTCTTTGATCACAGATC
3' ss Score
9
Exon sequences
Seq C1 exon
ATATTGATGAGTGCAAGGTAATCCACGATGTTTGCCGAAACGGGGAGTGTGTCAATGACAGAGGATCATATCACTGCATCTGTAAAACTGGCTACACTCCGGACATAACAGGGACCGCCTGTGTAG
Seq A exon
GTAGGTGCTTTGTTTCTAAGGCTTTATTCCCGCGTAGAAATTTCAGGTTATAGGGGGAAAAGACCCACACTAAAAAATCTGGAATTCATCTCTACTTTGAATAGAAACTTATGAGACAATCGACAAATGCTTCACAGAGTCTGTAGGTGTAGAGATGGAGGGCGCAGAAAGTCTTTCAAATGCACTTCTACACTACCTTTCTTTGATCACAG
Seq C2 exon
ATCTAAATGAGTGCAACCAGGCTCCCAAACCCTGCAATTTCATATGCAAAAACACAGAAGGGAGTTACCAGTGTTCCTGCCCCAAGGGCTATATTCTGCAAGAGGATGGAAGGAGCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007302:ENSRNOT00000056022:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGTGCAAGGTAATCCACG
R:
CTTTGCAGCTCCTTCCATCCT
Band lengths:
245-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]