MmuINT0062911 @ mm10
Intron Retention
Gene
ENSMUSG00000027204 | Fbn1
Description
fibrillin 1 [Source:MGI Symbol;Acc:MGI:95489]
Coordinates
chr2:125312500-125312964:-
Coord C1 exon
chr2:125312839-125312964
Coord A exon
chr2:125312623-125312838
Coord C2 exon
chr2:125312500-125312622
Length
216 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
CTATCTTTCTTTAATCACAGATC
3' ss Score
9.06
Exon sequences
Seq C1 exon
ATATTGATGAGTGCAAGGTTATTCATGATGTTTGCCGAAATGGGGAGTGTGTCAACGACAGAGGGTCCTATCACTGCATCTGTAAAACTGGCTACACTCCGGATATAACAGGGACCGCCTGTGTAG
Seq A exon
GTAGGTACTTCGTTTCTAATGCTTTATTCCTGAGTAGAAATTTCAGGTTATGGGAGAGAAAACCCCACACTAAAAATCTAAAATGCATCTCTACTTTCAATTTTAAAAAAAAGTATGAGGCAATCATCAAATACTTCACAGAGTTTGTAGGTATAGATATGGAACATTCAGAAAGTCTTACAAATGGACGTCTATACTATCTTTCTTTAATCACAG
Seq C2 exon
ATCTGAATGAATGCAACCAGGCTCCCAAACCCTGCAATTTTATATGCAAAAACACAGAAGGGAGTTACCAGTGTTCCTGCCCGAAGGGCTACATTCTGCAAGAGGATGGAAGGAGCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027204:ENSMUST00000028633:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGAGTGCAAGGTTATTCATGA
R:
TTGCAGCTCCTTCCATCCTCT
Band lengths:
244-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types