GgaINT0027939 @ galGal3
Intron Retention
Gene
ENSGALG00000004960 | FBN1
Description
NA
Coordinates
chr10:11684735-11685191:-
Coord C1 exon
chr10:11685066-11685191
Coord A exon
chr10:11684858-11685065
Coord C2 exon
chr10:11684735-11684857
Length
208 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
TCTGGTTTTGCTTATTTTAGATC
3' ss Score
9.02
Exon sequences
Seq C1 exon
ATATTGATGAGTGCAAGGTTATCCACGATGTCTGCCGTAATGGGGAATGCATCAATGAAAGGGGATCTTACCGTTGTCACTGCAATCTTGGCTATACTACAGATATAACTGGCACTCTTTGCATAG
Seq A exon
GTAGGTTTTTCGTTATGTTCTATGAATATAAAGTTTATTATGCTGTATGTACATAAAGCCTATTAGTAAGAGATGGCTTGTGGAAAGAAATACAAAAACTTTGAAAAATGAGGGAAAAAATGTCCTTCATTAAGAGGTTTTGAGCATTTTAAAAAACATCACAAATGTCGGTCGTTATCATGAAGATATCTGGTTTTGCTTATTTTAG
Seq C2 exon
ATCTGAATGAATGTAATGAGTCCCCCAAACCTTGCAATTTCATCTGCAAAAACACAGAAGGGAGCTTCCAGTGCTCATGTCCGAAAGGGTACATCCTTCAAGAAGATGGGAGAAGCTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004960:ENSGALT00000038883:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGAGTGCAAGGTTATCCACG
R:
TTTGCAGCTTCTCCCATCTTCT
Band lengths:
244-452
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]