BtaINT0061143 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015307 | FBN2
Description
fibrillin 2 [Source:HGNC Symbol;Acc:HGNC:3604]
Coordinates
chr7:26900170-26902025:+
Coord C1 exon
chr7:26900170-26900295
Coord A exon
chr7:26900296-26901818
Coord C2 exon
chr7:26901819-26902025
Length
1523 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
TAACTACATTGTCATTTCAGACA
3' ss Score
5.65
Exon sequences
Seq C1 exon
ATGAAAATGAATGCAGGACCAAACCAGGAATCTGTGAAAACGGGCGTTGTGTTAACACTATTGGGAGCTATAGATGTGAGTGTAATGAAGGCTTTCAGTCCAGCTCTTCTGGCACTGAGTGCCTTG
Seq A exon
GTAAGTTGATAAACAGAGTATATTTTACTTGGTGAATAAAGCATGTGTTTTGTGATGTAATCACAGAAGAGTTCTATATATATATCCTTGTCTGCAAAATAGATCCCCCAATCTGAGTAATCCATGTACCTCTTCCTGAAGATAGACATCTATTAAAATGATGTATTTATACACGTGTGTGTAGTACATACATCCATGCTTAATGTAAATAACCATCTTAAGTAGTCTTTCCAAAATTAAGATTAATTAAGCACTACGGAAAATGTGACTCTAGTAAAACTTACATCAGGAAATGATTTAATTCCAAAAGAAAATATTTGCTATGTGAGGTAAGTTTTGCTATATTAATGATATTAAAGAAAATGCCACATTTCAAAAATGCAGTGAGAGTTAATTTTTATTTTATGATACAGAAAAGTGTTTTACAAAACATTTTCTTGTGGAAAATATAAGTCTCAGGCATTTTAATGATAAAATGCATATATCATAAACTGTTTAGTTAATTATGAGCAGGTGTAAAAGTATGAAGTAGTCAAATTTAAGGCAGAGAAATAGCACTCCTCATGGGCTTTGAGGCAAAAACAGCACATTTCAGCTACATCAGATTGTTCTCAGAATGATGTCATCTGCTTCAAATCCTAGGAAATTATTAGTCATGAAAACATATTTTGTTTATTATTATCTTCAATCTAGATCTTCATCAGGAAATAGAAAAGCTGACCTACATAGAAAGCGTACTTTTCTGTCCATATTACTAACAGTTCATTAGGATGGTTCTTAAAACCCCATTAAAGATCTCTTTGCCAGCTTATATCAGTGAAATCCCTTTATTTATAATAATTAAAAAAACTACTTAATCCAATGTTTAAACAGTCTTTTAGATGTCTAAAATACAGGAGATTAGATTGAATACGTACCAAGATGATAACATAGTCCAGAATTTGCTTTTCAAAAACAAATCCTGTTCTCATTTGCTTACTTAAAGGGAAGTATTTTTCTTTGATTTTTCCTTTCAGTTGGATTCTATAGGAATGGTAGTTTACTGTCACTTAGCTGCTGAGGAAAAGAAGAAAAAACTCACCTCTCTTTCTTTAGTATCAGTTATTAAATGTAATAAACTGTTGCTAAAGAGCACTGTGAAGTGAACCTCCAACAGAACTTTCTAATCATTGTCTTAAGCAATGTGACTCTTCACATAAAAGAATATTTAACCTTTCAAAAGGTATTGCTATGGAATTGCCCTGGTGGTCCAGTGGCTAAGACTCCTCCCTGCCAGTTGCAGGGGGCCCAGGTTCAGTCCCTGGCTGAGGAACTAGATCCCACACGCCACAACTCAGAGTCCACATGTGGTAGCTAAAGATGCTGTATGCTACAACTAAGACCCAGCACCACCAAAATAAATGGATTTTTTTTTAAGTATTGTTATGAAGGAAAACATTGATTGTCCTTTTTAACGTGAAGACCCAGATAACGAAGTGTCAGTCCCTTGACACTTGTGCTTTTTAACTACATTGTCATTTCAG
Seq C2 exon
ACAATCGCCAGGGCCTCTGCTTTGCAGAGGTGTTGCAGACCATGTGTCAGATGGCATCCAGCAGCCGTAACCTTGTCACAAAGTCAGAATGCTGCTGCGACGGGGGGCGAGGCTGGGGTCATCAGTGTGAGCTCTGCCCACTCCCTGGAACTGCACAGTACAAAAAGATATGTCCTCATGGCCCAGGCTATACCACTGATGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015307:ENSBTAT00000020360:90
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
NA
C2:
PF0068312=TB=WD(100=62.9),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATGCAGGACCAAACCAGG
R:
CTCTTCCATCAGTGGTATAGCCTG
Band lengths:
326-1849
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]