RnoINT0059646 @ rn6
Intron Retention
Gene
ENSRNOG00000043219 | Fbn2
Description
fibrillin 2 [Source:RGD Symbol;Acc:620910]
Coordinates
chr18:53083898-53085195:-
Coord C1 exon
chr18:53085070-53085195
Coord A exon
chr18:53084105-53085069
Coord C2 exon
chr18:53083898-53084104
Length
965 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
GGTCTTGTGTTCTGCTCCAGACA
3' ss Score
7.07
Exon sequences
Seq C1 exon
ACGAAAACGAATGCAGGACCAAGCCCGGCATCTGTGAAAATGGACGCTGCGTTAACATCATTGGAAGCTACAGGTGTGAGTGCAACGAAGGATTCCAGTCAAGCTCCTCGGGCACCGAATGCCTTG
Seq A exon
GTGAGTGAATATATGACTACTTCCCTGGGTGAACATTGCACATCTATGACGTCATCACAGCACAGCTCCACACATTTATCCTTGCCTTGTACTCCACATGCCTCCGCCCACAGATTTACATCTATTAAAGTGATGTGTCTCTATGCCTACGCCTCACACACCCGTGTAGCCGAAGTAACAACCTGAAATAGTCTTTCCAAAGTGGAGATTAGTTAAAGCTCTGTGGAAAATGTGACTTTAGTAAGACTGACATCAGGAGATGATCTAATTCCAAAAAGAAAATATTTTCAGTGGGAGGTAAGCACTGCCAATCCTAATGCAAAGCAAACGCCACACGTTTCAAAAGCACGGCGGGGGTTAATCCTTACATTATGGTCCAGAAAAAAAATGCTTGACATAATAATTTCTAATTGGAAATATAACCGCATGGGCACTATGGCTCACGGAACCAATGCTGGAACGTACACACTGTAGCTGGTGCAGTTAATGACGGCAGCTGTGAAGATAGGGTGTGGTCAACTTTAAAGGAACCAGATCAAGGTCCTCTCACTGTAGACAGTAAGAGATTAATAGAATAAAATCCATAACACAGCTTTGAATTTATTCTTCATTTCCTTCCTATCATCACTTTGTCTAACAGGAAAAGAACTTCATCCGATGTTTCTTCCTTTTGGGTTCTCTGGGAATACAGCTCCTAACCATTTGCCTGTTACTTTCATTGAATTGAAAAGAATAATAATTTGTTCAATATTCCCCGGAATAGCTTTTGTCAGGTTTAATACTCAATTCATAGTATAAACACCATGGGAGAGGGTGTTGTCAACAAACAATTGCTAGGCCACAACTGCTCACTCAAGAAGAATCCTTTGAGTTTTGAAGGTTTTGGGTGGGCAAAGACAGCATGATGGTCCACTAAGAACCAAACCGATCCCCAGCCTTGACTCTGGTCTTGTGTTCTGCTCCAG
Seq C2 exon
ACAACCGACAGGGCCTGTGCTTCGCAGAGGTGCTGCAGACAATGTGTCAGATGGCCTCCAGTAGCCGTAACCTCGTCACAAAGTCAGAATGCTGCTGTGATGGCGGGCGAGGCTGGGGCCACCAGTGTGAGCTCTGCCCACTTCCTGGAACTGCCCAGTACAAAAAGATCTGCCCCCATGGCCCAGGATATGCCACTGACGGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043219:ENSRNOT00000066548:49
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3)
A:
NA
C2:
PF0068312=TB=WD(100=62.9),PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAAACGAATGCAGGACCA
R:
TCCGTCAGTGGCATATCCTGG
Band lengths:
329-1294
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]