BtaINT0061197 @ bosTau6
Intron Retention
Gene
ENSBTAG00000000595 | FBN3
Description
fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
Coordinates
chr7:18073073-18073450:-
Coord C1 exon
chr7:18073352-18073450
Coord A exon
chr7:18073169-18073351
Coord C2 exon
chr7:18073073-18073168
Length
183 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GCCCTGCTCCCTGCTCACAGGGT
3' ss Score
10.32
Exon sequences
Seq C1 exon
CCATCTGTAGGCACGCCTGTGGCCAGGGCTTCTGTTCCCGACCCAACCTCTGTGCCTGCGCTGATGGGAAGCTGGCCCCCAGCTGCGGGGTGAGCCGAG
Seq A exon
GTGAGCAGGAAGTGATCCCCCACCCCAGGGGCGGGAAGAGGAGGTGAATGGCTTCTGGAAGCCTCTGGAAGTTTCCAGGCTGGTTTTGCTGAAGGACCAGAGCCAGGCTGGACACTTCTAATCCCAGAGCCTTGAGCAGGTATCTCAGGGCTTTCCTGTGTGTGCCCTGCTCCCTGCTCACAG
Seq C2 exon
GGTCAGGGTGCAGTGTGAGCTGTATGAATGGGGGCAGCTGTCGAGGGGAGTCTTGTCTGTGCCAGAGGGGCTACACAGGCACCGTGTGTGGGCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000595:ENSBTAT00000035613:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCCAGGGCTTCTGTTC
R:
GTTGCCCACACACGGTGC
Band lengths:
178-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]