RnoINT0059571 @ rn6
Intron Retention
Gene
ENSRNOG00000007302 | Fbn1
Description
fibrillin 1 [Source:RGD Symbol;Acc:620908]
Coordinates
chr3:117728509-117737300:-
Coord C1 exon
chr3:117737202-117737300
Coord A exon
chr3:117728605-117737201
Coord C2 exon
chr3:117728509-117728604
Length
8597 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
CCCTCTCTTCTTATTCCTAGTAC
3' ss Score
7.5
Exon sequences
Seq C1 exon
CCATTTGCCGGCATTCCTGTGGGGACGGATTCTGCTCAAGACCAAACATGTGCACTTGCCCATCTGGTCAGATATCGCCTTCCTGTGGCTCCAGATCCA
Seq A exon
GTGAGTCGGACATGTCATTAAAGACAATATTATTTTATGTGGTTAGGCCTCATTTTCTTCTAAATTTGCTGTTAGGTTTTTTTTCCTTTGCCTGCAATATACCCCTCAACCCCCACTAGAACATCTGCCTTCTTCACTTTGCCCGGAATTCTTGAAAAGGCATTCCTGGGTCTAGCCTCCCAATCCCTTCTTTACTCTCTGTAAGGAAATTGCCTATGGACTGTAGATTCCAGGAAAAGCATAAAGATTATGACCCTCAATGTCAGAATGTCAGTACAGCCCCATTCATCTCTGTACCTTTAATAGAAGCGCTGGGGAAAAGGGTTCACAGAAATGATCATAGAATGAACTTTTTTGACTCCAGAAAAGTAGCCGTTTTTCTTTGTGCTACCGAAATAGAAAACTGATCTGATGAAAACCTTATTTGAAACTCAAGATGCTTGCCTTTCCACCAGGAAACCAGGAGATTCAGGGACACAGAGACATGACATTAGACGTGCTGTTTATTCTGTCTGGCCATGAAAACATCCACAGTTCATGCTACAGAGCCACTGCCTTCTGGTCTCACTGTTTCCTTTATCTTTAAGTGTGGTAACCAGAGTATTGAAATGGGGGATAGTGGGGGCTGGGAGGCCAGCCCTTTATTAGTTGTTTAAAAGTTAAAGTTCATGTCTGTATAAACAGTCAAACTGTTGCCAAGGCAAAACAAATGTGTACTCCTATTTCCCTTCCCGTTTCTGGGGGGAGAAAATGCACCCCCCTCACTGCTATTCCGTATTGGATGGGATTGTCAGAATCACTGGTAAGGAGCGAGTGTGGTCTTTTTTCTTTGTCTGGTGCAAGGAGAGACTGCAGTGTGTCATGATACCCTGTCTGCTGAGAGGTTTCTCATGGAGTTGGGGCTTTTATGAGCCCAGTGGCTGCCTCCGGTGAATTGTCTGGTACAGCAGATATTCTTAGTGTCCACTCATGTCCCTTGGCATTCGCAGGGGAGCACATGAAGTCACCCTGAAAGCTTGGTCAATGGTTTTCTGTCCAGAGATGGTCCAGAGTAGAGAAGTGGGAAGTGCTGTGGGGTCAGTAGACACAGAAACATCTTTCAACCAGTGACAGTGACAGATGGGCCAGCTCTGGGGCTTCTATGCTCCCAGTTTAGATAGCTCTGAGATTTGTTTTGCACTGTCTCCTAAATTTTTTTTTTTTTTTACCAGAAATCAGCTTCAGCCCATAGTTTGCCTCCTGGAACCACTCCCAAACACACTACCTTTGCTGAAACTGTTCTCTTGGAGTCTGATTCTAGTGGAAGCCATGCAAAGTGGGCCCAATACTAAATAAAGCTGGTTGTAGATCAGGATAGAAATTCCCTTGTGATCTGGGACTCTCACTCCACACACTGAGCTTGGCACACTTGATTTTAGTTTGGTTTTACACATGCTTGAGCTGACTCTACCCATCAAAGGCACTCAAGCTGGAGGAACAGAAAGAGACGATGCCATTTCAGGAAGATGCAGGGCATCTCTGGGTCTACCCTGAAGACCCCAGACTGCTACCAGGAGAGACAGCCTCAGTATTGGAAAGACCGCAGTTATCAAAGCAGGAATAAAACCAATCTCTTAGGGGTTGGGGATTTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCGAAAAAAAGAACCAACCCCCCCCCCCAAAAAAAAACCAATCTCTTAGACTGGCCTCTCTTATCTGATGGTTACTTTAAGGGAAGAAAATCACAGCCGAAAGTGTCCAGATAGAAAGTTCATCCAATGATAATGTGAATGCTGGAGACGTTTCTGTAAGGGCAAACCATGAGATGTGGGCAGGATTTTAACAAGGCCGGAGATAATGTCTGTATGGTCCTGGTGTGCTTCAAACTAGCCCTGAGGTTGGAAGAAGTGTATCAGTCAGATCCCAGCCAGACATAAGCTAGAGTTGAGTCTGGGACTTATGGGTGGTGCTTTCTGGAGAGTTGGATGCATCTGTCTGCAGTGCTGGGCTTTGGGTAAAGCCCCAGAGCTGAGTGTAGATCTGAGTAGTGTATGGAAGAGACTTATTTCATCAAGATCTTTGAGGGATATGGAGTCTTAAAAATTATTGGCTCAAACTCTGTTAGAATTAACATTGTCCTAAGAGGTTGAAAAAAATTTACAGTTGGTAATATTAAAAAAAAAATAAGCGTAGCTGAAGATGGCCAGAATCTTTCTGGGCTTTTAAAACTGTGTTTATGGATTAGTTGTGCTGTGTTACAGAAGAGTGTCCATCCTGTAAACGTAGCCAGTGTGTATGGATCACTTGGTAACTCTCCTGATAATGGGATAGCATCCATCAGTGAGATATTCTCATACAAATACCTGTTCTGTTAAAAGGGGCCAGTTCCCAGGGTATCTAACCTTTTGGTGTTGTGGCAGAACTCTGTCATTTATAGCCACCCCGGGGCACTTGCAGCCCACAGGAGGCTGGTTGGGCAGGTCTACTTTCCATCAGTTCAACGCCATCCTAAGAGAGAACTCTAATCACTATGTGATGGGGGATACAGGGTTGTGGATCTCTGACCTCTTAGTGTTCTGATCTGGCGGAGGAAAGGCTGAAAGGGAGCCGCTCTTGCAGGTGGTGTTTGACTTGGATGCCCCATGGAGTCCAGATAGGAAGACATCTCTCTACAAGTTTCAGACTCCAGCCTGCAATTCTCATGGGACCAGGATTCAACTTCCCTTAGATCTAGCATGCCTCTGGCCACTGGATGCTTACGCTCGAGAGCAAAAGGAGGATTAGATAGACAAAGAGTGAGAGCTGGGTTTTTGTTCATTCGTTTTTCTCTCTGGCTTTTAATTCCAGTTCATTTAGTTTCTGAGGCCAGGGTCCTATTGTGTTTATTAAATGAGTCCACAAACCTCCTTATATCTGTATGTACACATACATTTGCAAATGCATTTTAGCTTATAATAATACTAGGATAGCGTTTCAGGGGGCTGGAGAGATGGCACAGAGGTGCAGAGGACCTGAGCTCAGTTTTCAGCATCCATAACGTTAACTCCCAACCGCCTGTAACACCTGCTCCGTGGGCTCTGGTACCCTCTTCTGGCCTCTGTGGTACAGGCAGAACACTCACACGAATAGAAGGAAGGAAGGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGGAGGAAGGAAAACGCTTTAGAGAGCCGGAGACCTGGCTCAGTGGTTGAGGCTCGGTCTGCTCTGCAGAGGACCCAGGTTCTCCTCCATCCCCTCCCTGCCGCTCTCACCAGGTACCTCACAACTGCCTGAAGTCCAGCTCCAGGTGACTTGAAACCTTCTTCTGGGCTCCTAAGGCCCTCACCCAGGCACCCACAGATACACATAAGTACGATTTTAAAAATTACCTTAAACAAAGAAAATTGCTTCGGGCTGTCATAACTAAATCTCATGGAACTTTATTTTATGGCTTTAGAAGCTGGGACTTGTTGATGCCAGGGTTCTGGAAGTTTTCATGTCTGATAAGAGTACATCTTCCTAGTTGTTACCCTGTATATTTTCACATGGCAGCAGAGTGAACAGGTTCCTGGTCCTCTTCGGAAGGGACTGTCTCAGTTTTTTCTCCATTGTCATCATAAAAAATAGCCCAGAGAAAGGGTTTATCTGGCCCCCAGTCTCAGGTTAGAGTTCATCCTTGCAGGTGGGTCAGGGTGGCAGGATCTTGAAGCAGGAAGTCGCATCCCATCTCCAGTGAAGAGCAGAGAGCAGTAGTGTAATGCCTGCCTGCGCGCACCTCACTTTCTCCATCTCTATACAGGCCTGAATCCTAAGCAAGGGAATGGTGCCACCCACAGTGGACAGCTACTTACCCTATTATCCTAGTTGGTCAGACATGTGATCTCCAGACATTCCCGAGCAAGCCTTTCTCTGTGGTTGGCTTTCTCCAAATCGGTAGGCTCTTCCACAAAGCAAGATTTTAAAGCCAGTGAACTCAAACTTATCAGTCTACCCTTGGCTTTCATGCTTTTGGCATCCAGTCCCAGAATACATAGCGTACTCTTTGATCACAGAGATTTTTCTCTAACTTGCCTCTAAATGTTTATAGCTTTACATCGACATCTGTGGTTTCTATGGAGGTGCATTTTGTGTTAAGTGTGAGGTTGGAGGTCGCATCAATTTTTACCTCTGGGTGTCCCGTTGCTTCAGAAGAAACTAAAATTCTGGACACCACACTCCAGTCTCAGCCTACCCTGTGCTGGGTGTTTGTAGAGACAAGCCATGTCAGGCTTACTCCCACTTTTAAAGGAATACTTTCCCCTTAAACTCTAAGACCCATGAATGAAAGCAATTATGGGAACCTCTGTTCTGTTGATAACCCCAAGGCCCACTGGGCAATGTGACCACTGGACTCACAATGAATATACAACCATGTGCCAGAAAAGTGAGTGGGCTCAGAGAAAAGTGACTTGTGCCATAGCTACTCTGAAAGGCTTGATGCTGGAAAACACATTCTAGGGATCTGTAGGGTTTACACTGACAGGAAGGGGTACCTAAAGGCTGTCCAGACTCATTCCTTAAGCTTGCTGAATTGGTTTTCTCTCTGCTCAGACTTTATGGAAACACCTATCACAGATGCCACTGAACCTGTCCTTTTCTGAACCTTTTCCATCTCAGGTGACTTTTATTTGGAGATGCCCTGGTCCTGTTTTAAGCTATGTGAGTCTGTAGACACCCACAGATGTTTGTCCATCCAAATGAAAACGGTTCTTGTCCTGCAGTGACTCAGGCCACCTCTGTGGATTGTTGTCTCAGGTGTAGAGTCTAGAGGTTGGTCTGTCTGTTTCATTTGCCTGCTTGGGCTTTTCCCAGTGCTGAAATTAAAACACACATTCAGTTGCTTACTTGAAATTTGCCCTAGTGCTCTCTCCGGGGGCTGAGTCTGTCTAGAGGGTGACGGCTGAGATGTTGAGATCCAAATATTGGCCCTGCATCTTTCCCGTCCTGTGCCTCAAGCATGCCATTCCTTTCTAGTTAGTCATTTTAATGAGTTTGTACTGCGCTTTCTAAAGACAGGCCTTTGAGCTCTTCCCGTGACCTTCTCAATGGAAGATTTTCAGTGTGTGCTTGTTGAGTGATCGAAAGGACCGATTCGGAAATGAATGCAAAACTTATTTGGGACCTTTTGTGGCCGCAGGTAAATAAATGTTGGCTGTGCCTGTTACTTCTAGGATGTGGGTGCTGGTGTGACGTGATCTGAGGCTCCCTGGCCATCTTTAATGGGGCTTTTTCATGAGGGGTCTGACTACCCAGGACAGCTTCAACTTTCACAATGACTGCTTAGACTCTCCTAGTATTGTTTCTGGTAAAAAGTCTCAAAACAGATTGAATTTAGACATGTGCCTTGACATGGGTATTTTAGCATATCGGATTGATGGATACTGCATCCTGTGAGTGTGAGTAGAACTCTGATTTTCAGGGTGTTTTTTTCTTTCATTAGATAAACTCTTGTCTGCTAATTACAAAGCATCTGGACCCCTGTTTAAGTTAGAGAGCAAACTTAGACGGGGTACCAGTGGCAGGATTCAGTGCAAAGAAAAGCCTGTCTGTGAATCTGGTACCTCCAGATGATTTCCAGTTTGGGTGGCAAAGGCCAGGCCTTGTCACAGAGATACTGGGTTTGCACCCACCATCTAAAACAACTTCCCAGATGAGGTCTCAGTCTACAGATCATTGGAATGTACTCTGTAGCCCAGGCTGGCCCTGAATTCATGCCAACCCCCCACACTCTAGCCTCAGCCTACCTTGTGCTGGGTGTTTATAGAGACAAGCCATGTCAGGCTCACTCCCACTTTTAAAGGAATGCTTTCCCCTAAATTCTAAGATCCATGCATGCAAGCAATGACGGGGACCTCCACTCTGCCGATGACCCCAAGGCCCACTGGGCAGTGTGACCACTGGACCCACAGTGACTTTTGGCCTTCCAAGTCTTACAGGGTAGTTTTGGTTTTTGAAGGTAAAAGAGTATTTTTAACCTGGAGAAGTTTCAACTGGAAAGAGGTGGTTTAAGGAAATGAAAGTCATATCAAGGGAGGCTTTTGATCTGTCAGTCTTCAATGTACACACAGTTGTTCTTTGCCCTGACTTTCAATTTGAACATGTAACTGGAAAGCCACTGTGCAAGTCGCTGGCCACGCTTTCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGAAATCGAGAAGTAGCTAAGTGGCTTTGTTGCTCATGTGGGAATGGAAATCAGGTCTTGGCACGAGTCGCTTTAATTGAAATCAGTTTTTGCACTGAGTTTGCTCTAGGGATGACGTCATTTCCTGCCCTTTTCCAGTCCTCGCTGTTTTTCTAAGATAGGATGGAACTAAGCATAGCACCAAATTTTAAAGCAATTGTACACCATTTCCTGACCCACTTAGAATAGTATCCAGTCTTAAGCACATTTTTTCCCCTTTGTATACTTGTAGATTGCTCTAGAGTTAAAAAGCACTTGGCTGAGAGGCTTTAGTGGAGCCTCAAGCAACAGTTTGCATAGTTTGCCTGATGTCTGTAGTGGGGGTGGGGGGTGGCGGTGGGGAGCTATTAACTCTTGTAGATGGAGGGAAAAAGATAAAAACATTTGAATAATTATTCACTTAGACCTGTATAAGTACCTGGGATCCATGGGACAGCTTCTTAGCCTGGGCTACTCTTCCAGTGTAGCTCTTGTTGCCATTGCTAGGCAGCGTGAGCTAAGCAAATGCGATTAATCTTGCTGTTCTGGGCACCCTGAGGGGTGTAATTAAGTGTCATGACCTTCACTGTCAAGGAAGATGAGTCAGGGAAAGGAGAAACAAGAAAAGTACCCAAGTGTGTGTGTGTGTGTGTGTGAGGGGTTCCACAAAGGGACACCTCAGAAACCTAGCAGTTTTCATGACACATAGTAGGCATTCAGATGCGTTTGTTGAGGGACCAAATAATCTGCTTACAAGTCAGGTGACTGTTCCAGGAGCCCAGCTGGGTATTTAGGGCCCTACTGAAGAGGCTTTGAGTGCTGAGGTGCAGGAATCTTTTGGCTCAGGAGAAATGGAACCTTTAATGATATTCCAGGAAGAGAGCAAGACTCTTGGAAAGGGAGATCACTTTCAACTAGAATTCTCTTCGTGTCTAAGAGGGTGCAGTAAGAACAGGAGTTTGATTTTCCTTTCCAGCTGTCAGGCTAGGTTGACCTCCGAATAGTTGTAGCTCTTTAGACAAACGGCCTTTCCCCTCGTAGCCAAGCAGTCATTTCTCAGCACTGCAGTGAGGGCCGCTCACAGATGAGGTTGGCTGTGGGGAGGACTCTGCTGTACCCAGGGTGGGGGCAAGGTTTGGCCTGGGCATTTCATGAGTGGAGCCCTTAGTCTCAGCTTCTGCCAAGATGGACAGACCTCGGTTCCCAGCCGCCATTTCCATTGGGAGTTGTCTCCCACACGTAGGGCACACCAGAAAAAGCCAAAACTCTCATATCAAGAAGCATGAACAGGACTCATGATTCCTCTAGCCAAACCTTTGGTCTTCTCTAGGTAGGGTTAGCTACTGCTCTAGAAACCAGGGGCCAGCTGGATCTTTTGAAAGTGCTATTAGCACAAGGCAGCCTACATGCTAGAGGAGAGAGCATGTTCTAGCTATGACTACCGCCATCTCTCATAGGAGGGTCTACCAGACATTTCTAAGATTCCACTTCTAGTGTGTCACTGTCTCAAGTCTGGTGGTGTCCACCCATAGTTTAGAGCTTGGCAAAGCACACTTCTATGGGTGAGAATGTGACACTGAATGAATTTGAAATACCCATGGTCTTACAGTTTAAGTGAGCAGCTCCTTCTGAGTTCACTCCAGTCAGCACCCCCTACCCTCCGTCCATCAAACATCGTTGCTATGTAACGCTTCGAGTATGTCCTTTCATCCTGCCATCAAAACAGAAGAGGAGTCGGTGCAATGTATTACTCCAACCGTTTCCCTAGCTGGATACTTTGAACTCTGAATCCTTTCACGGAATCCTTGCCATATCAACCTTGTCCTGTGCCGTCGCTCAGACACTCCTTTCTTATTGGTATAAATCACAGAGATGACACTGAGCTGTTGAGTTCTGCTAAATTAAGGAAGTCATTTAGCTCCATTAAAGCAAATGCCCAAGAAAAAAACAGCATTGCACTGTAAGTGGCTTTATACATAACATAATAAGCCTCGATAATTAGGACCCTTCTGCTATCTGCATGATGTATGAGTCTCGGTGAATTATTTTACTTATTATTTTTGTCAAAGAGCTACAAATCATCTCAGGGAAAATCTTCCATCTACATACGCAGAGTGCCACACTAAACCATCCCTCTCTTCTTATTCCTAG
Seq C2 exon
TACAACACTGTAGCATCCGCTGTATGAATGGGGGCAGCTGCAGCGATGACCACTGTCTGTGCCAGAAGGGGTACATTGGCACTCACTGCGGACAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007302:ENSRNOT00000056022:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]