BtaINT0062515 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34977246-34977826:-
Coord C1 exon
chr18:34977626-34977826
Coord A exon
chr18:34977554-34977625
Coord C2 exon
chr18:34977246-34977553
Length
72 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
AACCCTGCTCTGTCTTGCAGTGA
3' ss Score
9.35
Exon sequences
Seq C1 exon
GCATGGTCCAGAGCAGCTCCCCAGTCATGCCTACAGCAGTGGGGCCCTCCACTGTACCCCCGGAAGAACCTCCAGGCTCCAGTTTACCCAGTGACACTTCAGATGAGATCATGGACCTGCTGGTGCAGTCAGTGACCAAGAGCAGCCCCCGTGCCTTAGCTGCTAGGGAACGCAAGCGTTCCCGTGGCAACCGCAAGTCTT
Seq A exon
GTGAGTATTCCCTGCATGCCCACTGCCCGCCTTAACCCCATCAAGCCCCACCAACCCTGCTCTGTCTTGCAG
Seq C2 exon
TGAGACGGACGCTGAAGAGCGGGCTGGGAGAGGATCTGGTGCAGGCACTTGGACTGAGCAAGGGTCCTGGCCTGGAAGTGTGAAGATGCTGCCTCCGGGACCCCTATCTGGGCCACAGCCCGCAGTGCAGGAGACTACAGTGAGGAGGCACCAAAGCAGAATTCTGGGCCTCTTCTCAACTCTAGGGCCACTCTGGGCCTGTGGCCAGTGCCGTAAGCAGTATTAGCTGTGTGTGCCTGTGTGGATGTGCGTGTGCATGTGTGAGCTCCCCGGATACATGGAGCACAATAAAGTTTTCCTAGCCAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427:ENSBTAT00000063472:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.972
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAGTCAGTGACCAAGAG
R:
GGCAGCATCTTCACACTTCCA
Band lengths:
173-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development