GgaINT0024825 @ galGal3
Intron Retention
Gene
ENSGALG00000002198 | FHOD1
Description
NA
Coordinates
chr11:1333280-1334207:+
Coord C1 exon
chr11:1333280-1333456
Coord A exon
chr11:1333457-1333942
Coord C2 exon
chr11:1333943-1334207
Length
486 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CTGCTCTCCTGTTCTCGCAGTGC
3' ss Score
9.13
Exon sequences
Seq C1 exon
GGACGGGGCTCACCACTCCAAGCCAGGGCTCCCCAGCCCAGGAGGACGTTCCCAGCTCACCCGACGACGCCTCAGATGAGATCATGGACCGCCTGGTGAAGTCGGTGACGCACAGTGCCAACCCCCGGCCCTGCCCCAGCCGGGAGCGCAGGAGGTCCCGCGGCAACAGGAAGTCCT
Seq A exon
GTGAGTCCCCACTGCCACTGTCCCCACACCCCGTGCCCCTGTGTCCCGGCCGCTGTGCCTTGTCTCCATGTTCTATCCTTGCTCATCCCTGTGTCCCTGTTCAGATGCTCATATGCCATCTCAGTGTCCCTGGCCCCATTCCGTGTCCTTGCTCCCACACCTGTTCCATCTCTGTATTCCCCTTTCCCATCCCTTTACTTTGTCGTATGTCTCATCAATGTCTCTGTTCTCTGCCCCTCTGCTACTTCCCATCTCTGGATCTCTGCTCAGGTGCTCTTTCCCACCTTTTGTGTCCCAGTCCCAACTCTGTGTCTCTGTCCCCGTGCCACTCCATGCCTTGCCACCTTTCCCTGACCCCTTCAGACCCCTCACACAGCCGCAACCCCGGCACCCACCCATGCCACCAGGACCCCTTATCTCATCCCCACACCAAGGCCACAAAGCCCAATGCACAGTGACCCAGCAGCTGCTCTCCTGTTCTCGCAG
Seq C2 exon
TGCGACGGACTCTGAAGAGTGGGCTGAGTGATGAGCTGGTGCAGGCGCTGGGCTTGGGAAGGGCACCGGGTATGGAGGTGTGAAGTGACCACCTGCATCCCATGGGGAAGGACACGGGGATGCTTGGCACGCTCCGCACCTTCGGTCTCACCTCCAGCTTCAGAGCACAATGGGAGCGATGCCCCAGAGCTGCTCTGTGGGGTCAGGATGCAGGATGGAGGATGCAGGATGGAGGAGCACATGCTGCGGTGGGAGTTGGAGCAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198:ENSGALT00000003437:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACGCCTCAGATGAGATCA
R:
TCCATCCTGCATCCTCCATCC
Band lengths:
347-833
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]