RnoINT0061046 @ rn6
Intron Retention
Gene
ENSRNOG00000054625 | Fhod1
Description
formin homology 2 domain containing 1 [Source:RGD Symbol;Acc:1589776]
Coordinates
chr19:37284923-37285514:-
Coord C1 exon
chr19:37285314-37285514
Coord A exon
chr19:37285223-37285313
Coord C2 exon
chr19:37284923-37285222
Length
91 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGC
5' ss Score
3.28
3' ss Seq
ACCCTGCTCTGTCCCTACAGTGA
3' ss Score
10.73
Exon sequences
Seq C1 exon
GTATGGTCCAGAGTAGTTCCCCCGTCACACACACAACAGTAGGGCCCTTCACTGCATCCCCTGAGGAGACTGCAGCCTCTGGTTTACCTAGTGACACATCAGATGAGATAATGGACCTGCTGGTGCAGTCAGTCACCAAGAGCAGTCCTAGAGCCTTGGCTGCTCGGGAGAGGAAGCGCTCTCGTGGCAACCGGAAGTCCT
Seq A exon
GTGAGCATCCCCTTATAAACCCACTGAATGCTCCCTTATCTTCTCCAACACCCCCTACCCCGCCCTCTGTAACCCTGCTCTGTCCCTACAG
Seq C2 exon
TGAGGCGGACATTGAAGAGTGGACTTGGAGATGACCTGGTGCAGGCACTGGGACTAAGCAAAGCTCCTGGCCTAGAGGTGTAAGGGTGCTGCCACACCTGGAGCTGAGCAGAGAGGGCGCAGAGCACAAACCTGGTTTCAGAAGCTTGCACCCAGAAACCAGCATTGTGAACAGTATTAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACATACATGTATTTCGCATATGTGAGTTCCCTATTCGGAACAAAATAAAGTTTACCTAGCTAATCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054625:ENSRNOT00000084734:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.556
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCAGTCAGTCACCAAGAG
R:
CACCCTTACACCTCTAGGCCA
Band lengths:
168-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]