DreINT0068493 @ danRer10
Intron Retention
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34342552-34345666:+
Coord C1 exon
chr7:34342552-34342725
Coord A exon
chr7:34342726-34345388
Coord C2 exon
chr7:34345389-34345666
Length
2663 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGT
5' ss Score
7.83
3' ss Seq
TGTGTGTGTGTGTGTTGCAGTGC
3' ss Score
10.36
Exon sequences
Seq C1 exon
GTGTGGGCAGGCTAAGCACACACATGTCTGTAGCCAAAGAGGACAGCGCCAGCTCACAGGACGATGCCACAGATGAGATCATGGATCGTCTGGTAAAGTCTGTCACCCAGAATCCCACAGAGAGAGCGTCTAGTCCAAAAACACGGAAACGCTCGCGGCTTAACCGAAAGTCAT
Seq A exon
GTGAGTACATTTTGACTGTCAGTGCATTTTTTTTTAACCACTGAACTTTATAACCATTCCTGAAGGTTGTTTTAGCCCTAAACCTGGGGGATGAGATTAAGGATTTAGTCACTGTTTGCATTCAACACTACCTGTGTCCAAAACACAACCTAATCTGGCTTCTACCATTGCTTAGCTTTTGAAAGCCCCCTAAATCTCCCTGTCAGATCCATATCGTAGCACCTTTTTGCTTCTGCTTGTGCCAGACTGAACTGCCAGACAACACAGAAATCAAACACCACAAAGAGTCTTTTGTAGAACACGTTCTTGGAACTGTACTTGTTTTGTTTTTTTAAAGCAAAAGCTCCAAACCCCAAACCTGAAAATTATTATATAGATGATATAAGTGAGAATTTTTAAAAAAGTTAATTATGCTGGTTCCATCTTTTCTGTCTGGTTCTGGTATATCTTAAGGCATGGTCACAGTTACACTATTTCATGTGATTGGGAATTTTGCAAAAGGGGGATTCACAGTTAGTTAATGTTTTTTTTTGGCATACTGACCAACAGAAAGCTTATTTTGAACATAGTTTCAAACATCATTACACAATAGACAGTTGGTGTATTCTTGCCGTGTCATATTTATGGTACAACTTATTAAATTGATCATTTCTGAGAATTACAGCATGTATACTGCAACTTCTGTACCATCTGACAGATTTATTTAGACATTAATGAAGCTGTTCACCTAGTGAGGCTAGGAGTTACTCTGTAGAAACACATAGTAGAACATAACCTGTTGTCATCTTAAAATGAATGCAGCTAATGGATAATGCAATGAAATGGATTTTTCTCCCCTCTACCTTTTAGATATCAGAAATGCTTTTTGTAAAAAAATGATCCACATTTACTCAAAACAGAAATTCCCCAAAATGTCAATATTGAAACAGAAATCAAAGTGTTAAATATATACCTTTGGAATGCCCTATGTTTTTTTTTTATCTGCTGACTTTTTTTATCGAAAGTAAACCTTAAAAAAAACTGTTCTATATTTTTATTTTATGTATTTATTGCTGTTGATGTCTTATTATTATTATTATTATTATTATTATTATTATTATTATAGAAAAGTGATATTTATAAAATGTTGTCAATGTGATCTGGTTTTGCCATGAAATAGCTCAAAGTTATGGCAATGAATTCAAAATGCTCTTTCTCTCTCTAAAACTTATCCATGAGGTTATATTAGTATCATAATTTATTTCTAAAACAAAATGTCTTCCTATATTTTACTTTTACTCAGTTGTGAGTTATAATTTTTTTAAAAATCTGTGTTTTACTTCTTCGAGTAAGGGTAATACTGGCAATTATCAGGTGTTCTTATAAATTTCAAACAAACATACCATGAAAAAACTGTACAAAAGCACGCACATCTCTCTTAATTGGGTGCTCAGCCAAAACCGCAAAAAGTGCAAATTAAATGTAAATCAAAGGCGGCAACACCAAGGCTCCAAAAATACAAATTTATTAAATTAAAAAGGCTGACACAGAGTGTAACAAACAAACATACCATCAAATAAATGTAAATATAAATAAATTTACATTTCTAATTTTGTCACATACAGAGTCATATACGGTACGATATGCAGTGAAATGCTGACACAACCACTTGTGACCTTAAGATAATAATAATATTAATAATAGAATTGAAATTAGACCTTCTGGAACCCACATGAACCCAAGATTCTCACAGATATCAGTCAAATTTGGTAAAGGAAAAATCATGGTTTGGGGTTACATTCAGTATGGGGGCATGTGAGAGATCTGCAGAGTCAGAGACATTTGTGCTGCCCATTACATTACAAAGCACAGGAGAGGGCAAATTCTTCTGCAGGATAGAGCTCCTTCTCATACTTCAGCCTTCAAAGCAAAGAAGGTCAAGGTGCTCCAGGATTGGCCAGCCCAGTCACCACACATGAAAACTATTGAGCATGTCTGGGGTAAGGCATTGAAGATTAATCCAAAGAATCGTGATTAACTCTGGGAGTCCTGTAAGAACGCTTTCTTTGCCATTCCAGATGACTTTATTCATAAGTGATTTGAGTCATTGCTGAGATGTATGGATGCAGACGTCCAAGCTCATGGTAGTCAAACACAATATTAATTCTTTCTCCATTGCACCATGACTTTATATTCTATACTGGACATTATTTCTGTTAAGTGACAAAGACTTTTGTATAAGCAAAGTCAGACCTTACTGTCCTAATTAAACAATTAAAAATCAAGGCATGATCATATTTTATTTTGGTAAAATAAGCATAATCTAGAGGCTTTTGTTTTTCATATAAGCCACTTCTGATACCAAATGATCAACTAGAAGTCAAGTTATTACTTGTTATTCCTAAAAGTTGGATAGACGACAAGGCTTTTGTCAGGTAGTGTCAGACCTGAGTTCAATTCCTGGTTCAAGGTTTTTTGCAGATCCTTCCCTTCTCTCTCTGCTTTCTTGTCTCCCCTTTACTGTCCTATAAAAATAAAGGTTAAAAACCCTTTGCGGAAATAATGATGTATCAAATAAGTCTTTTGGTTCAAACAGACCCAGAATGCAGAAACCGCAAACTGAAACTTAATTTCATGCTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTTGCAG
Seq C2 exon
TGCGAAGGACTCTGAAGAGTGGTCTAAGTGTGGAAGTGGTGCAGGCTCTCGGCCTTGGCAGTTCTAACGGGAAGGTCTGAATCTGGAAGCTCTCATGGTGTAAACACTTGTAAAGCAGCATAAGAATCCATAAGGAGAGCTGCAATAATGACAGGAAGAACTGTGACAAAGGGATCTTCACTAAACGCAGTCTGTGCCATCCCTGAACCGAAATCTGCCTGCCAATGCGAACAATTCACTGGATGACTCATATGCTGTATGGATGCCTGAAGTGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768:ENSDART00000073447:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=NA C2=0.362
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]