BtaINT0062519 @ bosTau6
Intron Retention
Gene
ENSBTAG00000032427 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr18:34983691-34984162:-
Coord C1 exon
chr18:34984068-34984162
Coord A exon
chr18:34983803-34984067
Coord C2 exon
chr18:34983691-34983802
Length
265 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
GTGGTGACCCCTCCCCCCAGTCC
3' ss Score
7.95
Exon sequences
Seq C1 exon
CCCTAGGCCAGCTGATGCTGTTTGTGGATGGGATGCTGGGGGTGGTGGCCCACACTGAGACTGTGCAGTGGCTGTACACGCTGTGTGCCAGCCTG
Seq A exon
GTAAGTGGCCTTCCACCCAGCCACGCACCCTTTTCCCACTGCCTCTCTCTGGCCCTTAGTTTCCTCAGCAAAGTGGGCTGGAATGGAGTGGGTCTGTGGCCCCTCTAAGCCTCAAAGGCAGTTCAACACCTGGTCCTACAGATGGCTCTTTCTGCTTAGACTGTCCTCTCTGGGTCCAGCCCCCCCGAGCCCTTTCTCCTCCCCACCAGGAGCCAGCACAGGTCTGGCCCCAGCCCCACTCACACGTGGTGACCCCTCCCCCCAG
Seq C2 exon
TCCCGCTTGGTGGTGAAGACAGCCCTGAAACTGCTACTGGTGTTCGTGGAATACTCTGAGAGCAACGCACCGCTGTTCATCCGTGCAGTCAACTCTGTGGCCAGCACCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032427:ENSBTAT00000063472:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTAGGCCAGCTGATGC
R:
GGCCACAGAGTTGACTGCAC
Band lengths:
197-462
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development