HsaINT0064163 @ hg38
Intron Retention
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr16:67237657-67238128:-
Coord C1 exon
chr16:67238034-67238128
Coord A exon
chr16:67237769-67238033
Coord C2 exon
chr16:67237657-67237768
Length
265 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
GTACTGACCTCTCTCCTCAGTCC
3' ss Score
8.53
Exon sequences
Seq C1 exon
CGCTCGGCCAGCTGATGCTCTTTGTGGATGGAATGCTGGGGGTGGTGGCCCACAGTGACACTATTCAGTGGCTGTACACATTGTGTGCCAGCCTG
Seq A exon
GTAAGTGGCTCTCCACTCAGCCTTATACCCTTTGCCTGTTGCTTCTCTCTGGGCCTCAGTTTCCTGTTCTGCAAAGTGAGCTGGAAGGGAGTGAGTCTGAGGCCTCTGTAAGCCTATAAGGCACTTCAGTGCCTGGGCCTGGGGCCAGGGTCATTCTGCCTAGATTCTCTCTGGGTCCAGCCCCAGCAGCCCTTCCCCTTCCCCAGCAACAGCTGGCACAGGTCTGGCCTAAGCCCCACTCATATGTACTGACCTCTCTCCTCAG
Seq C2 exon
TCCCGCTTGGTGGTGAAGACAGCCCTGAAGCTGCTGTTGGTGTTTGTAGAATACTCCGAAAACAACGCACCGCTGTTCATCCGTGCAGTGAACTCTGTGGCCAGCACCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723:ENST00000258201:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGCTCTTTGTGGATGGA
R:
TGGCCACAGAGTTCACTGCA
Band lengths:
188-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development