DreINT0068497 @ danRer10
Intron Retention
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34311134-34312196:+
Coord C1 exon
chr7:34311134-34311228
Coord A exon
chr7:34311229-34312084
Coord C2 exon
chr7:34312085-34312196
Length
856 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTCATTGTCTGTTTCTTCAGTCT
3' ss Score
7.44
Exon sequences
Seq C1 exon
CTCTCAGTCAGATCATGCTGTTTGTGGACGGCATGAATGGCATTGTGAACCACAACGAGACTGTACAATGGCTGTACACGCTTTGCGGCAGCCTG
Seq A exon
GTGAGTGATGGCAGCACAAACACCAAGACCACAATACAGTATTACTTACATTGGGATTGGGTTTCAGCAGTGCCTGTGTGTATTAAAGCAGATTCACTATTTAATGCTGCAGTATGTCAGCACAATTAATAATTGATAGCTTGATGTTTAGAAGTTGATATATAATAATCTTTTTGTCCTTGATGGCTGGATTATGTTTAGATTTACTGATCGAGCAGATGCTATATATTTCCAGTGTAATTGATTTTTTTAATGTATGTCATTATATAATGGCTTTTCTAGCCAAAGGGGTTAGACATATAGTTAGTGGTTAGGTGTTAGAGGTATGGGTTTAGTTGAGTTAGGGTTAGGTAGAAATATTGTAGGAGAATAGTTTGTAGGAACACAGTTTTTTGATGTTGAAATGGTTATACAACAGCGCTAACCAGTTTGTGATGGTTTACAAGTTTAAAAGATGCTTGTGCTGTAGTTTAATATGAATCTCTTTTGTAAGTTTTTACAGTAATGGGTTTAGTCATCCTGATCATCAGATTGAGGTCATATCCCTCTGCGTAATATCAATGAGGAAGTGAAAATAAGATGATTAAGAGTCCATTCAAGTAACTCAAAAAATAAAGCTTCCGCCAGACTTGATTAATTTACAACAAACACAAAGTTCTCAGCCAATTTAAAACATTTGTTTATGTTCTAAATGTATATTTTTTTCATCACGCATGCTGTTATGTGAAGTACTTGATTGCAATAAAAAGTTTAAGACTGAGACTTAGAGAGTGATGATGGATACTGCCATCTTCTGTATGAGGGCTGTAAGTGCTGACTGTTTATGATCTGATTTCTTCATTGTCTGTTTCTTCAG
Seq C2 exon
TCTCGGCTGGTTGTGAAGACTGCTCTGAAGCTGCTGATAGTGTTTGTTGAATACACCGAGTCCAATAGTCCACTGCTTATTCAGGCCGTCAACATTGTGGATGGAAAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768:ENSDART00000073447:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCAGTCAGATCATGCTGT
R:
TCTCTTTCCATCCACAATGTTGACG
Band lengths:
206-1062
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]