GgaINT0024809 @ galGal3
Intron Retention
Gene
ENSGALG00000002198 | FHOD1
Description
NA
Coordinates
chr11:1326560-1326808:+
Coord C1 exon
chr11:1326560-1326654
Coord A exon
chr11:1326655-1326731
Coord C2 exon
chr11:1326732-1326808
Length
77 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
3' ss Seq
ACCCCATGCCTTGCCTTCAGGAT
3' ss Score
10.09
Exon sequences
Seq C1 exon
CCTTGAGCCAGATCATGCTCTTCGTGGACGGGATGCAGGGTGTCATCAACCACAATGAGACCGTCCAGTGGCTGTACACGCTGTCAGGAAGCCCG
Seq A exon
GTAAGCTGCCGTCACCCCTGGCTGTGACTGTCCCAATGCGCTATCCCCTGGGGCTTCACCCCATGCCTTGCCTTCAG
Seq C2 exon
GATGGGCTCAGTGCCTTGCGCTCATTGGGTGCTGTTCTTCAATGTCATCAAGAGTCCCCATGGCCTCTTTATGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002198:ENSGALT00000003437:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGATCATGCTCTTCGTG
R:
GTCACATAAAGAGGCCATGGGG
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]