BtaINT0062541 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021581 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr24:20833949-20843247:-
Coord C1 exon
chr24:20843136-20843247
Coord A exon
chr24:20834044-20843135
Coord C2 exon
chr24:20833949-20834043
Length
9092 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
GATTTTTGCCTTATTCATAGGAG
3' ss Score
6.01
Exon sequences
Seq C1 exon
TTCCGCCTGGTGGTGAAGACAGCCCTGAAGCTGCTGCTGGTCTTTGTGGAATACTCGGAGTCCAATGCACCTCTCCTGATTCAGGCCATCTCTGCCGTGGACACAAAAAGGG
Seq A exon
GTGAGTGGTCCCTGCTTACTATGTCATCCAAGTAAAAGTGTCTCATGGAAGATTTCCACTTTTTATTTCCATGTTCAAGGCAGAATTGAAAAGGAACAGAATTCCCTTTGTGTGGACTTCTGACATCAGGAAACAGATGTTTCAGGATGCATATGTATGAAGATTAGGTGAAGGAGGGAACAGGGAAAGAAAAGCACCCCTAACTGACCCAGGACAGGTCAGACTCCAGCTTATCCTTATGCTCCATCTTCAGCCACCACAACTGAATGCACAGAACCAGCTTGTTCTCTTTTCCCATCCTGTTGGAGTCACTTTGGCTCCTTTGTCTCTTTCCCTTCCTCCCACCTGCTTTATTGGCTTTCACCCCACAATGTTCCTTAAACATCTTCCCTCCGTTGCATCCTCTTCACCATCTGTCACTGGGCATCCTTTACTTCCCTGAAATGCTACCCGCCTCTCTGCTATTGGAGGCTTCTTCTAAAGCACAAATATGGTCACGTCGTTTTCCGTCTGAAACCTGCCGGTGGCTCCCCAGTGCCCGGTTAGGGCCGACCCTTCACGTCCCATCCCTGTTTACCCACCACCCCCACCTCCCACCCAGCCTGCGCCAGGCCCGCCCTGCCTTGGGTCAGATGAGCATACTCTTTCAAAGCCCCATGTGCCCCTCATCTCTGCTGTGCCCATTCTCCCAGGAGTGTGTGTCCTTGCTGGACAGTGGGGTGCCTGTCCCCTCTGGGTGTCCCAGCACCTGGCTGACCCACAGCAGGAAGGCCTAGTGCCGGCCTGCACACCTGATGACAAATGAGCTTTGGATCTGGTTTACAGCATGACATGCTGCGTCCCCTTTAATGTTGTGAAGTCTGATTCTGAAACGGGTTTTTGTTTTGTTTTATTCTTTAAAACAGCTTCCCTGGTAGCTTAGACAGTAAAGAATCTGCCTACAATGCAGGAGACCAGGGTTTGATCCCTGGGTTGGAAAGATCCCCTGGAGAAGGGCTTGGCAACCCACTCCAATATTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGTGGGCTACAATCTATGCAGTTGCAAAGAGTTGGAAATGACTGAGTGACTAACAAATACTTAGGTTTTGTTCCTCAGTAGGACATTTTTATTAATATTGTCATCCCCACAAAGACTCTAACAAGAACAAAAATTTGTTAACATTAATTATTTTCTTTTTATAATGGAAATACTCTAGAAAATTTGGAAAAAAACAGTGTAAAGAAGACCATAAAAATTTACCTGTAGTCTCACAAGATAGAATTGTTCTTAACATGTTGGTGTATGGTTGTGTGTGTGTATGTATGTGTGGACACACATGTTTATGTACAAGTTAGCTCAGGGACAACCGATGAAAAGAAATGAGAGGCCTAAATAGCCTTCTTTGATTCAAACCACTTGTTGTCTCTGACTCAGTGTTGATCAGAGACCCACATTCAGGACTGAATGCAAAGATGAAGGAAAGTAGCTTACTAGTTGCTTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGATCCAGCAATCCCACTGCTGGGCATACACACTGAGGAAACCAGAAGGGAATGAGACACGTGTACCCCAATGTTCATCGCAGCACTGTTTATAATAGCCAGGGCATGGATGCAAGCTAGATGTCCATCAGCAGATGAATGGATAAGAAAGCTATGGTACATATACACAATGGAGTATTACTCAGCCATTAAAAAGAATACATTTGAATCAGTTCTAAGGAGGTGGATGAAATTGGAGCCTATTATCCAGAGTGAAGTAAGCCAGAAGGAAAAACATAAATACAGTATACTAACGCATATATATGGAATTTAGAAAGATGGTAACAATAACCTGGTGTACGAGACAGCAAAAGAGACAATTATGTTTAGAACAGTTTTATGGACTCTGTGGGAGAGGGAGAGGGTGGGAAGATCTGGGAGAATGACATTGAAACATGTAAAATATCATGTAAGAAACGAGTTGCCAGTCCAGGTTCGATACACGATACTGGATGCTTGGGGCTAGTGCACTCGGACGACCCAGAGGGATGGTATAGGGAGGGAGGAGGGAGGAGGGTTCAGGATGGGGAACACATGTGTGCCTGTGGCGGATTCATTTTGATATTTGGCAAAACTAATACAATTATGTAAAGTTAAAAATAAAATAAAATAAAAAAAAAACCAACAATAATAACAATAAAAAAAAAAAAAGAAAGTAAGTTTGAATATAAGTTAATGAAAGCCATCCAGGACCATGAACTGGGATTCTGCACTTTTCCCACAAACACACAGGCAGATGTCAGTCCCCAGCATGGTAGAATATAGGTGGGAGGCAACTCCAGGCCTGTGTTTGCGTGTACCACAGAGGCAGTCCTAGTGTGTGAGCAGGGGCTGTGAGTCTGGAAGGTTGATGCCAGGTTGGGGCAGGTTTTTTCTGCCAAGGCTTGTTGCCATCTGAAGCATGAGCATGAAGACCCTCGTGGCCTAAAGCACATCAAGGGGACCCCTTGAGAATCCTAATGAAGGCTCCCAATGACTCAGAAGCCAGGATGGGCTTTCCCAAGGCCAGTCCATGGCTTAGGGTCAAAGGTGGATGTTTGGGAAGAGAGTGAAGCTGATCCTTTCATTCATCCTTGGAAGATTCATACTCTATTCTCCAACTCTTAGAGTTACTTTAGGATAATTAGCAGACTCTTCATTTTCCTATCCTAAATTTCAGGTAACCCTTGGGCCCTTGTCATGTGGGCTGTGTTAAAGGAAACAACCTTCTTATGACCTTGAGATTCTCCCTTGACTTCACTGGTTTGGGAACTCATAGCTTCCTTCCTCAGACTGCATATCTCAATGGAGAGACCATTTGGGATAGAGGAGTGATCCCGAACACACCCAACCCCCAAGTCTCCACCTGCAGGCCCAGCTGTACACTCAGCTGTACTCTCTCCCCCAAGACAAAGCCATGGCTGCTGTTTCCCAATTTATAAAAATAAAAAGTCATAACAGAGAATGGATTGTTTTCTCAACCTCATGGTTTTTCCAATGAAATTTCTTAAGCTATTGGCAAGTATTGTCATCCAGTTGCTACTGAGCACTAGCAGCTGAGAACAAAAAGGATCAGCACTGATGCAAAAACTCAACCATAGCTTATCATGTGTGGTTCAGTCACATATTTCTCTATGACGTGTGTGGTCTTGGCCATGACATTATAACACGTACATATAACACCATCCTATATTACTGCTAGTAAAACTGTCCCTGACCTCTGTGTTGAAGTTGGACACACAAATACGCCCTGCTGTTCTGCAGGGGGAGGCAGGACCTGCTGGTGTGCTTCCACCTGGCAGGTTGGGAAGCTGCTCTCCAGTCCCTCTCAGCTGGACGAGCGAGTAGGTAGACATGCCAGGGGTGACCGAGGGCCAGCTGAGTATGTCCATTTCTACACAGGTTTATAAATCTGCCATAAATGTGACTCCTCAAGGTGGTTTTGGACTCATTCTTTTGGAGGTTAGGGTGAGAATGGGCATGTTAACGTACAGACCTTTTTAGTAGAAAGGAATTCTTTTGGATGATGAAAAATGATAGGTTTAAAGAATCAGCAAGGAAAATCAACAAGTGAGCCACAAGTTCTCAGAAATTACTAGCAAATGAAGTTGTCCAAGAACAAATTCCTCTGATTGCTGTATAAACAGCACATCCCACACATGGGTTAACGGGAAGGGTTCATTGGTGAGCATGGATGGACAAATTGCTGTTTTGCCAACACTGGGCCAGTTAGGGAGCAGCAATAAAAGCTGAGGGATTTAGGTGTATCATAGGGACTAGCAAATATGTATGAATTAATGAAAATTAAAAGGGCCCCATTTGATCGTGGCAGTTGGCACTTTGGCTCAGGTGCTAGAATGAAACCATGGATTTGAGTTAGTCTCTGAGGCATGGCTCAGTGTCATACCTGTCTGTGTAGACTGCTGGCATGTCTTCTCCTTTGCATGGGTCTTCAAGTCACTTTCTCTTCCTAGTGGACAGGGCCAGGCAGCAAGAGAGAATGGCAGTTAGTAGTCATGGAAGCCCATGAGAAGGCTTTGCTTTCTCATTCTGCCATCATCAAAGACTTCTTCACTCTAGTGATTAGCAGGAAACTGGTCGAGAATCCCCTGCTCCCCTGGGCAGGGTGCCCCCTCCCTCTGACTGGGTTTCCCTCCCAGACAGAGGGTGGGGGTAAGTGACCAGATGGGGTACCTTATTTTGAAATTTCAGTCATAAATCTTGAGTCCTGCTAATTTGGTTCAACACTGCTTTTGAAGAGGTGCCATTTTTCATTTGAATGTGAGGTGATGAGATATGACATAATTTTTAAACATGTGTCTCACACATGATTAACAGGGTTGGGGAGGTGGGTGGGGAATCCAGACATCCTTTCAAGCCATCTTGGCTCTGACTTGTGCTCAAGGGTACGTTGCTCTGTGAAGACCGCACAAAGCATGGTGGAGGTTAGAGTGCACAGAACTCAAGCTCTGTTTCCTTGGTTATTTGGAGCAGAAGTGTACTCGTTAAGTGTTCATCCCTCACAGTGAAAGACATGGAACATGCCACTGGGACCTTGTGTTTGAGTGTTAGACCAACTCGCATACGAGGCCTCATGCAAAATATTTTATTTTCTTTGGAGTTTAATACAGAGACTTGGAAGAGAGTAAGAGGACAAGAGTATTGAGCAGTTTATCCTGTGCTTATTCATTCTGGGTTGAGAGAGGGGTGATGTGGTTTGCTGGGAGGAGAGGGCCTGGCCAGGAAGCCTGCGGGGCAGGCCTGGGGGGGAGCGTGGGTGTCCCCTGCCCACCACCTCCACCACAGTGACAGCTACTGCTATCCAAGTGCCTGCCACACAACAGACACCGTTCTAAGCGTTTTTCATATAAAATTCATTTGTTTAACAATTATTTAAGTGCCAATCATGTGCCTTTGAACATCAGAAAGAAACCAGGCTGTCATCGATCCTATACTCACTCCAGTGCTGGAGGTGGAGTTGGAGAGAGACGGACAATGATGATGAAGGAAGTGACCATCTCCTGATGTTCTGCATCAGCACTCAGGAGAGGCGACAAAGTGCCTTATCTCCGGGACACCTCACAGTGAGCCGCTAGGGTGGACGTCATCTCACCAGTTTACATGCCTCCCCCTGAGCCTCTGTTCATTCCACTACTTTGGGGCTCAATTTTGTTCTCTGTTATGTAAAGGGGGAAGGTCGTGTGGTTTATGATTTTAACACAGGGCCACCCCCTACCCCCACATGTTATTCACTCAGTCATGTCCAACTCTGTGACCCCATGGACTGTGACCTCTATCCATGGGATACTCCAACAAGAATACTGGAGTGGGTGGCCATTGCCTTCTCCAGGGGATCTTCATGAGTCAGGGATTGAACCTGGGTCTCCTGCACTGCAGGCAGATTCTTTACCATCTGAGCCACCAGGGAAGCCCCAGGGAAGCCCCAGGGAAAGTGTTAGTTGCTACCCACACATACACACATGAAACCCCATATGGAGCAGTGAAGGTGTGGATGGGGGCGGCAGTGAACTGGACCCTTTAGTTCTGACGGGCGGGCTCCTGGGACAGGTACAACTGCTGGTGCTTGATGCAGGCCAGCTGGAGCCCTGACAAGGTATTTGTGTTGAACTAGAAGAGAAGGCTGGAGAAGGCAATGGTACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGGCGGAGGAGCCTGTTAGGCTGCAGTCCGTGGGGTCGCTAAGAGTCAGACACGACCGAGCGACTTCACTTTCACTTTTCACTTTCATACATTGGAGAAGGAAATGGCAATCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCAGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCAGAAGAGAAGGCAATGGCACTCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGTGGGCTGCAGTCCATGGGGTCGCGAAGAGTCAGACACGACTGAGCGACTTCCCTTTCACTTTTCGTTTTCATGCATTGGGGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGTGGGAGCCTGGTGGGCTGCCGTCTATGGGGTTGCACAGAGTTGGACACGACTGAAGCGACTTAGCAGCAGCAGAAGGTGTCCTCACTTTCCCCTTCATTCTTCTAAAAATTTATTTTCTTGTCCCCAAACAGTCAAAAGATAGTGAACATGTATCCCAGTAGTGTCTGATTACATGCAAATTTCCAGACTCAAAATCCTTAAATGATAAAAAGGGAATCAGATATTATAACTGAAGAAAACTTTTTGTGTATATCTTCTTTAAACTTTATTTAGTTTGGCTGTGCTGGGTCTTCATTGCTGTGTGGGCTTTGCTGTAGTGGCGGGGCGTGGGGTTCCTCTCTAGTTGCAGTGCCCAGGCCTCTCACTGAGGAGGCTTTTCTTGTCGGGGAGCACGGGCTCTAGGGCGTCCGTAGTTGCGGCACGCAGGCTCAGCAGTCGCGGTTCTTGGTGTTAGAGCACAGGCTCAGTGGTCGCGGTTCCTGGGTGTTAGAGCACAGGCTCAGTAGTTGTGGTGCACGGGCTTAGTTGCTCCGTGGCATATGGGATCTTTCCAGACCAGGGATCAAGTCAAATCCGTGTCTCCTGCATTGGCAGGCAGATTCTTTACCACTGAGCCATCAGAGGAGCCCCGAATATGTTTTTTAATTAAATGAAGCCCCTGTTTGAGTGCTTTCATTATAATGGATAAAGAGGTGCATAGATATGTGTGTCTGCATAAGAGAGAGAAAGAGAGAGGAAATAGACTATTCACCTCTCTCTTTGGGATGCTTGCCATTTGCTTCCTTCCTCTCATTCCACAGGCCCCGTTTGACATCTTTGGCTCCTAAGTAAGCAACCAAGAAGCATTTCAGGGCCCCTGAGTCCCACTGGGAATTCTCTGCATCAGTGCTGTCTCTCTTATACAGGCTTTTCTTTACCCATGTAGAACTCATGTTTTCATGTTTTGTACTGAGGTTGGGTGTGAGTATGAGTGACGGAAGTTGCCCTTTTATAAGCACAAGCAGAGGCATTTAGAAAGCTTGACCTACACCTGGACAATGAGACCTACTGACCACACTGATTATCTTGAGGACAGAAATGGTTACTTCGCCTGGCTATGAAGAAGAGGTGTGGACTTCAAGATAGTTTGATGATAAATATCAGCAAGAAGATAATTCAGCAGTTAGCACACAAAGGATCATGCTTTTGTGTTCGGAGTAACAAAGGGTTATAGAAGCTTAGTCATAGACTCCTAGTTTGGACTAACTGAGCAACTAGCCCAAAGGATGGGCTTCCCTGGTGGCTCAGAGGTTAAGGCATCTGCCTGCAATGCAGGAGACCTGGGTTCGATCCCTGAGTCAGGAAGATCCCCTGGAGAAGGCAGTGGCAGCCCACTCCAGTATTCTTGCCTGGGGAATCCCATGGACGGAGGAGCCTGGTGGGCTGCAGTCCACGGGGTTGCTAGGAGTCGAACACGACTGAGTGACTTCACTTTCAGCCCAAAATAAAAGGCATTTTGTTCCCTTGCTGGGATCACCAACAGACCTGAAATTCTACTTGTGTCTTTCATGTTTTATGGTAGGTACCTCATCCTTTTTAAATTCTCCTGTCTTGTCTCCTTACTGTGTGCAGTGAATCCTGTGGCTCTTTAAAAACTACCCCAGTTTAAAGCCACCCTGTACCCTCTCAGAGGTCCCCATTCACTAGTCAGCAGACATTTTATTGAGCACCTACTATGTGCTGGGCACTCTGCCAAGGGCAGAGAGACAAGACAGAAGCCATCACTTCCCTGGGGGAGCTTTGGTTCACAAGACCAGGAAATCAGCTCTGACATAACCCACCCAAGAATCAGCATTTGAAACCCACTGGTTTTAGGTTATTTCAGAATTTACTTTTATCAGCAAAAATAGACAATATCCCTTTGAGATCTTTATAGAGAAACCAGGAAAGAGCTGCATGTTCCACACCACCATGCCAGGGGCAAGGCAGCACTTCGCTGCAGATGTTTATCCCCAGAGTAGGAAATCATGTCAGGGTGTGTGTCCCCTTTGTGGCCTTGGCCTAGTGATCCTGAACATGGAGGGTTTTCCTGCCCTCCCTGGAGCCATGGGACAACCTCCGTGAGCGCCCCCCCACCAGTCTCACCGAGGAGTCACTTCTTACACCGAACCCTCCTCGACCATCTCACTTCAAAAGACAGACCACCGTCGTTGAGTGAGAGGCGTGGCTAAGCGCTTTGCCTTCTAATTGCTTTTACCCTGTGCTGGCATGCGTTCTGTGTCTGTGCCTGACTGTTCCATTTGACTGTAGACCTTCTGAGGGCCACCTTCTAGAGACCCAATTCCTTGTACCTGGTTGATGCCTAAATAGTTTTTGTGACTTGATACAATAGAGATAATATACTTCTGTTCTGGAAATGTCTGCTAGACGGACGTTTCACTGTTACTGTTTTGAGTCCTTTGCTTGAGTGACTGTAAAGCTCTCCTGAATCCTCTTTCCTTGCAGGAGATGGACACACATAGAGAGTAATTCCAGAACATTTCCATACTCGGAGAGTAAAATGCATGGTCTAAAAAAGCTGCATATAATTGGATTTTTTTTTTTAATTGCCTATTTAGTATAAAGGGAACTTTTCAAGCAAACTGATAGGCATCCGACATGAGGAATATACATTTTCAAGTAGACAAGGATGACACGGCATATCATCACCTCATTGGAAGGATGTACAGAGTCATGCTTCAAAATTTGGTGAAAGGCGTTCCTGTCATTGGGTGATGAGTCTGGATAAACTGTGATGTGAGTTGGATAAGGGGTCCCAAATTGCTGTTTCTCATGATTTTTGCCTTATTCATAG
Seq C2 exon
GAGTCACACCCTGGTCAAATATCATGGAAATCCTGGAGGAAAAGGATGGGGTCGACACGGAACTGCTGGTTTACGCGATGACTTTAGTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021581:ENSBTAT00000061003:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(12.6=39.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]