DreINT0068522 @ danRer10
Intron Retention
Gene
ENSDARG00000063682 | fhod3a
Description
formin homology 2 domain containing 3a [Source:ZFIN;Acc:ZDB-GENE-060503-633]
Coordinates
chr19:739762-740184:+
Coord C1 exon
chr19:739762-739873
Coord A exon
chr19:739874-740089
Coord C2 exon
chr19:740090-740184
Length
216 bp
Sequences
Splice sites
5' ss Seq
GAGGTGACA
5' ss Score
3.85
3' ss Seq
TGTGTGTGTGTGTTGTACAGGCT
3' ss Score
8.38
Exon sequences
Seq C1 exon
TTTCGTCTGGTGGTGAAGACGTCTCTGAAGCTGCTGCTGGTGTTTGTGGAGTATTCAGAGTCCAATGCTGCACTGCTCATCCAGGCCATAGACACTGTGGACAACAAGAGAG
Seq A exon
GTGACACACACACACACACACACACACACACACACACACACACACACACACACATAACTTATCAAGACAATTCAAAACGAAAGACCAAATCCAATTAGAGTATATTCCATTGTTTATTTAATATAATCAATATAATCAATAATATAATCTATAATAAGTATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTACAG
Seq C2 exon
GCTGTAAGTCATGGTCAAACGCTATGGAGATTTTAGCAGAGAAAGACGGTGTGGACACAGAGCTGCTGGTGTATGTGATGACCCTCATCAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063682:ENSDART00000146050:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(12.3=39.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGTGGTGAAGACGTCTC
R:
ATGAGGGTCATCACATACACCA
Band lengths:
196-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]