HsaINT0064188 @ hg19
Intron Retention
Gene
ENSG00000134775 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:26178]
Coordinates
chr18:34174750-34182731:+
Coord C1 exon
chr18:34174750-34174861
Coord A exon
chr18:34174862-34182636
Coord C2 exon
chr18:34182637-34182731
Length
7775 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GATTTTTGCTTTACTCATAGGGG
3' ss Score
6.52
Exon sequences
Seq C1 exon
TTCCGCCTGGTGGTGAAGACAGCCCTGAAGCTGCTGCTCGTCTTTGTAGAGTACTCGGAGTCCAACGCACCTCTCCTAATTCAGGCTGTCACTGCTGTTGACACGAAAAGAG
Seq A exon
GTGAGTAGTCCCTGCCCCCTTATGTCATGAAGGTGAAGGTGTCTAATGTAGGGAGGCTTCTGTGTTGTACATGCTTGAGACAGATATAAGAATTAATAGAATTCCCGAGATGTGGACTTCCCACTGCAAGAAACGTTTTTTAGGATAGTAAGCACACAAAGCTTAGGGCCGGAATGGGGTTTGATAATGAAAGAAAAGTGCTCATGAGCTTACCTGGGAGAGGTCAGATCCTGAGCTTGTCTTTGCCTCTACCCAGCTCCTGCCACTGAAACACAGAAGTCTAGCTCCTCCTCCTGTTCTTCCTGTCTTGTTCAGGGTTTCCCTGGCTCCTTCCTCCCCTCCCCTCTACGCTTCATTGCTTATGACCCCCAGATGTTTCTAGAACCTTCTCCCTTCCTCTCCTCCATCCCCTGCCCTGCCTTACTCAGGCCCTCACTAGGTTTAACCTATGCTCCTGGCCACCCTCCCAAACAGTTCGGTCACATCCAAAACCTGCCAGTGGCTTCCCAGTGCTTATAGCATAAAGTCAGTCCCCTGGCTAAGGGGACCCTTCACCCTTCAACTCCTGCCCAGCTGCCACCCCCTTCTCCCACCTCGGCTGTACCCCCACCCCCTTACCTTGGGCATGTGCTTTTAAAGCCCATGTATGCACCTCTTCTCTGCTGTGGTGGTGTTGCCCATCCCTGTCTCTCCAAGTCGGGGTTGCCTGCTCAAGGATGGGGTCTCTGTCTCCCAGAGTGATGTCCCAGCACTCCAGCTGGCCCAGAGCCAGCAGGCATGCTGCAAACACGTGGCGAAGAACGAGCTTCTGCTCTGGTTTACTGTGTAACGTGCTGTGGACCCCGTGATATTGGGAAGCCTGGAATTAAAATGCTTCCCAATTAAAATGATTTTTCTCCTTTTGTCTTTTGTTGTTTGTTTTCTTCCCCAGTAGGACTCAGGTATTATTATCATCATCCCCACAAAGACTCAAGAACAAAAACTTGACAATACTTTTTCTTTTTATGATTATAACTGTAATACTACTGTTACAATCATAAAAACTTGGGAAAAGTTTAAAGAAGACAATAAAAATTCACCTCTAGTTTCAACAAAGATAATCACTGTTAACCTGTTGGTATATTTCCTTATAGTTGTGTGTGTGTGTGCGTGCACACTATGCATAAACCAGCCAGGATGTGTCGGGAAGAAACGAGGGGCCTAAATTGCACTTTTGATTCAAACCATTTGTGTCTGTGATTTTTTTTTGTTTTTGTTTTTTGTCTTTTGTTTTTGAGACGGAGTCTTGCTCCGTCGCCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAAGCTCCACCTCGTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTGGCTGGGACTACAGGTGCCCACCACCATGCCCAGCTAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTATTTTTAGTAGAGACAGGGTATCACCGTGTTAGCCAGCACGGTCTCAGTCTCCTGACCTTGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCAGCGTGCCCAGCCAGTTGTGTCTGTGATTTAGCATTACTCAGACCCACCTTTGAATGCTGAATCCAAATGTGAAAGAAAGTAGCTTGAGTTATTTTAGAAGTTTAAATGAAAGTTAATGAAAAGCATCCAGGACCTTTAACTGGGGCTCCTATACCCTTGAACATGCAGATAGATGTCGGCACTAGGCATGGCTGATGGCAGGCAAGGAGGCAACTCGAGGTCTCTTTGTTGGGGGTGTGTTAGGGAGGCAAACTCTAGTACATGGACGGGGGCTGTGAGTCTGGAAGGTGTTTCCCAGGCTGAGGCAAGTTTCTTCTGCCACAAAATGTTGCCCTCTGCTGCTAGGTAGAAAGACCCTTATGGCCAAGAGTAGATCATGGGGCCGGCCCAGAATCCTTGATAAGGAATGCCAATTTCACAGAAACCAGGTCTAGCATTTCCAAGGCCAGTCAATTAGGTATAAGGTCAGCAGTGTGTGTTTTGGCAGCTGGTAGGCAGCAGCTTCTCTCCTTCATCCTTGGAGGATTTGTGTTTCATCTCCTAACTCTGGCGGTTGCTTGAGGACAACTAACAAACTCTTCATCTTACTGTCCTAAGCTTCAGGTAACCCCAGGGCCCTTGCTATGGGTGTGGGTTATAGGGGCCAACGTCTCATGACCTGGGTTCTCCTTTGGCTTTGCTGAGCTTCCAGCTCGGAGTTCCCTTCCTTGAACTTCATATCCCATAAAGGGAATGTTGTGATGGATGAGGGCATGATCCTGAAATGAACCCAGGCCTTTGTGTATCATATCCAAGACTCCATCCATAGCCCCAGCCAGAGATTCTCGTCTGTCAGACCAAGTCTCTCCATCAAGATAAAACAATGGCCATCTTTTCCTGATTAGTAAAAATAATAATAATAATAATAAAAACAGCTAATGAATTGTCTTCTTAGCTTTATTGTTTTTGTTTTTGTTTTGTTTTGTTTTGTTTTTGAGATGGAGTCTCACTCTGTTGCCCAGGCTAGAGTGCAGTGTCACGATCTCAGCTCACTGCAAGCTCTGCCTCTCGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCGAGTAGTTGGGACTACAGGTGCCCACCACCATGCCCGGCTAATTTTTTGTATTTTTAGTAGAGATGGGCTTTCACCGTTTTAGCCAGGATAGTCTCAATCTCCTGACCTCGTGATCCACCCGCCTTGGCCTCCCAGAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCTGGACAGCTTTATAGTTTTTGTCTATACAATTTCTTAAACCTTTGGCAACTGCTGTTGTCTGTCTGCTGCTGAGCACTAGCAGCTGAAAAAAAAAAAAAAAGGAATGGCACTAATGAAAAAACTCAGAAATAGCTTATCATGTGTGGCTCAATAGCATGTTTCTTTATGGACATGTGTGGTCTTGGCTGTGATTTTATAATGCATACATATAACGTCATCCTATTCTACTGCTAGTAGAATTGTTCCTGAATCCTATGATGGAATTAAACATATAAATATGCCATGGTATTCTGCAGAGAGCAACATTACTTCCAGGTGTGTTTCCATCTAGTGGGTTTAGAAGCAGCTCTCCGGTTCCCTCTCAACTGGGTGAGAGAGCAGACAGGTGCCAGAGGTGATTTAGGGTAAACTGAGCATATCCATTTGTGCACAAGTTTATAAATCATAAATTTTACTTCTCAAAGTGGCTTTAGACTCATTCCTCAGCAGGGATGAGTGGACATATGAGCAGTTGTCTTTTTGAATAGTTTCTTTCGGATAATGAAAACTGTCAGATTTAAGGAATCAGCAATAAAACCAACAAATAAACTCCCAGTCCTCAAAAATCATTACTACCTAAAGCAAATGAAGTTGTCCAGAACAAATTCCTTTGGTTGCATTATAAATATAAACATCATGCATGCTGCACGTGGGCTAACCAGAAGGCTTCATTCTGCAGTGTGGGCAATTTGGTCTGGGGCCAAGAGTGGGCCAGTTAGCAGGGATAAAAGCCAAAGGGGTTAAAGTCCAGCGTAAGGAGTGATCAGTGTTTATGAAGAAGGAAATTTGTTTTTAAATTTTTTTTTTTTTTAGACGGAGTCTTGCTGTGTCGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAAGCTCCACCTCTGCGTTACGCCATTCTTCTGCCTCAGCCTCCCGAGTAGTTGCACTACAGGCACCCGCCACCTCACCTGGCTAATTTTTTGTATTTTTAGTAGAGACTGGGTTTCACTGTGTTAGCCAGGATGGTCTCCATCTCCTGACCTCATGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGCGCCTGGCCAAAGAAGGAAAATTTAAAATGTTCCATTTGACCCAGGCTATTGCACTTTTGCTCAGGGCCTGAGATAAAAAGGTGGATTCAGGTTCATCTGTGGGGCATGGTATGGTATTAATATCAGACCACTGGATCATCTTCTCTTTGCTTGCACCTTGAAGTCACTTTCTCTTTCTGGTGGCCAGGGCCTGGCAGGAAGAGAGAAAGGCTCATGGGAGCCCTTAGAGAGCCTTGCTTTGTCATTTTGCCATATTGGAGACTCCCTTTCCTTAAGGTCTTCCCTGTGGTGGTTGACAGGAAATTGATTGACACCCCTCTGCTGTCTGGGTATGGGGTCCTTCCTTTTGAGTGAACAGGTTTGCCTCTCCCACAGAGGGTGAGGCAAGTGACCAGAGAGGATAACTCATGTTGAAATTTGTCCTAAATCTCAGGTCCCACTAATCTGGCTCAGCAGAGCTTTTGAAGTAGTTCAATTTTTCATTTGATAATTCTTAAACATAAGAATTCCTGCTATCACGCATGATTAGCAGGAAAAAAATTCAGCCATCCTTTCAAGCGATCCCATCTCTACTTTCTGCTTAAGAGTATATCTATCTGTGAAGATCGTGTAAAGTGTAGTGGAAGCTACAGGTTGACAGAACTCAAACTCTCTTTCCACTGTTATTTATAGCAGAAGCATCCACATTGAGTGTGTTTATGTAGTATGTGAAAAGACATGGAACATGCTGTGAGGAGCTTCTGTTTTCGTGTTAGACCAACCCATGTCTGAGGCACTGAGCTAAATACCTTATTTTCCTTCAGATTTAATGTGGAGATTTAGGAAAGTAAGAGGGGAGAAGTATTGAGCAATTGATTCTGTGTGTATTTATTTATCTGGGTTAAGAGAGGACTGGCCGGGGAGTCAGTGCAGGTGGTCCACCTGGGGGTAAACTGGGTATCTCCACCAACCACCACCATTACAATTACAGCTACTGATATTTGAGTATCTATCATGTAACAGACACAACTGTAAACATTCTTCACATAGGACCCATTTATTCAGCACATATTTGAGTATCAATTGTGTGCTTGCAGTCATCAGGAAAAAAGGCTCTCACAGAACCTGTACTCCAGTGTTTGGGGTGGGGGTGGGGGGCAGTGGAGTTGGAGAGAGACAGATGACAATGATTAAGTATTGTCTTCTAATGTACTCCAGCAGCGCTAAGGAAAAAAGACAAAGTGCTTTATCTCAATGACAATTCTCAGTAATCCTGTAAGGTAGGTACAGTCATCCCAGAGGCCTTAGGAGCTCCAGATGAGCTTCCTGAGCCCCTCCATCCCACTCCTTTGGGATCCAGTTTCTTTCTCTGTTATGTGAAGGGCTAGCATTATATGGTTTATGATTCCAGTACAGGAACCCTCTCCTCTGCAACACACACACACACACACACACACACACACACACACATATGCACACATACACACACACATTGTGGGGAGTTAACAAAGGCAATGAGGAGAGTGAGTGGACCCCATAATTCTGACAGGAGCTCCTAGGAAATGTGCAAGTGCTGGTGTTGAACACAGGCCTAGCCTGAGGCCTGCCAAGGCTATTTTTGTTGAACCAAATGTTTCTTCCCTTTTACCTTCATTGTAAATATTTCCGATTTTCTGCCCCAAAACAATAAAAAGAATGAACATCCATCCTAAGAGTGTACAAATATATGCACATTTCCAGACTTAAAATCCTTAGATGGTAATAAGAGACTCAGATAACACAGCTAAAAACACGTTTTTCAGTTAAATTAAGCCAGTGTTTGAGTGTTCTTATTATAAAGGATTAGATGCACACATGTGCATGTGTCTGTTTAAGGGGAGTACCAATGTAGTCTGGCTACCTTTCCCTCTCTCTCTGGGCTGCCTGCCATTGTTCCTTGGCCTTTGCTCCCTGAGGACCTGTTTCGCATCTTTGGCTCCAGAGTAAGCAACCAAAAGTAGTTCTGGGTCCATTAGCACCACTAGAAAGTCTTAGTTTCGATACTTTCTCCCCTGCACATTCTTCCTTTGAGCCATGCATGGGTAACTCACTACAACATGTGTTCTATGCCAAGGTTTTATACAAAATGTGAATGTTAGAAGCTGCCCCTGTTACAAACACAAATGGCGGCATCCAGATATCTTAAACTGGACAGTGAGACCCAAGGCCTGCTGATCAGATTGATTGACTGTCTTGAGAGCTGAGATGGTTACTTTGCAGTGGTTGGAAGAACAACTACACCGTGGTGTGGACTTCAAAGTAGTTTGATGATCAATATCAGCAAGGAGATAATTCAGTAGTCAGCAGGTGAAAGGAGAAAGAACATGTCTTTGTGCTCAGTTAGCAAGGGTCATAGAAGATTGCCCAGTTCTGACTGGCTGGGCAACTTAGCCAAAGCAAAAGGCTTTCTATTCACTTAGGAAAGCCAGGAGATCTCCATATTGAGCTACATTTGTGCCTTTTACGTCTTGTAGTAAGTAGGTACCTATTCTTTGTTTAATCCTCTTAAACAAATCCCCTTAAATCCTGTCTTCTCTGCTTTTCTTACTGTGTGCATCTGCTTCCTGGTTCTTTTAAAATTGCTTCAGCTTAACCCACTTCCTGCCTTCTCAGAGATCTCCATTCACTATTCAGCAGACATTTTACTGAGCATGTACTATATGCCAGGCACTGTCCTAAGGGCATGGAGATCAACAAGACAGATACTATCATGGTCCTTGGGAAACTTTTGTTCTCAAGGCCAAAATCAGCTCTGACATAGCCCATCCAAGGACCAGCATTTGGAAACTACTGTATTTAGGTTATTTCCAAGTTTACTTTTCTCAAGTAAAAATAAGCAATATCCCTTTGAGATCTTTATAGAGAAAGCACGAAAGAGCTTCATGTCGCAAACCACCAAGCCAAGAGCAAGGCAATTCTTATTTCACTTCACTTCAAATATTCATCTTGGGCCTAGAAAACCATGTCAAGGTGTTATGTGCCTCTTTTTGGTCTTGCCCTTGGCTTAGTGGTCCTGAATGTGAATGCGGAGTATCTCCTGTCCCTCCTAGATCCTGGAAATAACCACCCATAAGCCTTCGCCTGCAGAGCCCAGGCAGCAGTCATCTCTTGTGCCAAGTCCCCTGCAGTCATCCCTGCTGCAAGAGACCTCACTTGCACAGTGACAGGCTTAGCTGCATGCTTGGACACTTCTCAGCCATTGCTCTGTACTGGTGTCTGTTCTTGGGCTTATGCCTAGCTGCTCCATTAGATTATAAACCTATTGAGGGCAGCTGCCCAGTAGACCTTGTACCTAGCTGATACTTAATAGTATTTGTGCCTTGATGGAGTAGATGTAATATACTTCCGTTCTTGAGATATTTGCTAGACAGGCATGTCACTTATTTCTTTGAGTCACTGCTAGAGGGATGTTAAGATCTTCCACATCCCCTTTTCTTCTGTGCTGATGGATATTCTTAGAGTACTTACCAAGAGTTTTCTAATCTGTAGGCCTACAGAGTTGCAATGATTGGATTTTTAAAAATTACATATTTAATATGAAGAAATTTTCAAGCAAGTAAGCATCCAGACACTGAAGCGTACACAATGCTCTTGCCAAAAGGACAAAGATGATGTGAGATAGGGTTCCCTACTAAGAAATATCCTCAATTAGAAGCATGCTCAAATCCATCCTAAGGATAATGTCACACTTTGAAATTTGGTGACTGAAAGACGCTGCCATCACTGGATACGTCCTTGGATAATAAACTGTGATGTGAGTTAGATAAAGAATGTTGATGAATTGCTGTTTCTAATGATTTTTGCTTTACTCATAG
Seq C2 exon
GGGTCAAACCTTGGTCAAATATCATGGAAATCCTGGAGGAAAAAGATGGAGTTGATACGGAGCTACTGGTTTATGCAATGACTTTGGTGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134775-FHOD3:NM_025135:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(11.6=39.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)