GgaINT0094655 @ galGal4
Intron Retention
Gene
ENSGALG00000013124 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr2:83345381-83352220:+
Coord C1 exon
chr2:83345381-83345492
Coord A exon
chr2:83345493-83352125
Coord C2 exon
chr2:83352126-83352220
Length
6633 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTTTTCTGTTTTACATGTAGGAG
3' ss Score
8.89
Exon sequences
Seq C1 exon
TTCCGCCTTGTGGTAAAGACAGCACTGAAGCTGCTGCTTGTATTTGTGGAGTACACTGAATCCAATGCACCACTTTTAATCCAAGCAGTATCTACAGTTGATGAAAAGAGAG
Seq A exon
GTGAGTAGCCTTATCTGGGGGGGTGCAAAAACCCAGCACCACTGAGATCACATGGCATTTTGTCATTGATGTCAGTGATTGCAGAGTTGCTGTTGTGATGCCTGCCTTATGTGTTATTCACTTGATTTCTGAATTAGAAGTGTATTTTGAATATTCATACAATTTAAGATTGTTTTGAGGAATGAATTATAATGGAAAAGTGAGGAGGGAAAAGCTGAAGAACCATGCTGCTTCCAATACACCGTAGTCATTGCCTCCCCTTCCCTGCACCCGCAGGCAGTGTAAATCCCATTGCATATCCTGACCTTGGAGGCTCCTCTGGGCCAGACCATCTTTGCACTTCCTTCTGAGAAGAAGCAGTTTGATTTAGAAGAGAAAATGATATCTAATCGGTGTAATCCCTTTGAAGACAAAGACGAGGTCAGTAATAGTACAGGCTTTATAGTAAAAGCAAAACCATCTGTTGTTACATTAAAATAAAGCCCTTGAGCAGATATTATACTATGAAATCTGTTACCCTTCAGGCTCATGAGAAATACTTGAATATGCATACTGTATTTCTTACAAATAAATAGAACAAAAATGTTTTTTTCTTATTCTTCCCACAAAGCTATTACTAAGCTCTCAGGGCACTCCGTCTTGATGCAAAACATTCCTTTGCCTCAAGGAGAGTTTTTGAGGTTGGGAGAACCATTGTTGTGGTCTCAAACACATGGAGGTTTAGAGCAACATCCTCTTAGAGGTGCATGATGCCTCCATGCTGAACTTGTTTGAGCAACTTGATATGGTAAAAGTGAAACAAAAAGTTGGGGGATGGGGAGAAAGGGGCGGGCAGAATAGGAAAAAGTAGCCAGATTTTGCTTTTAACCATATAGTATCTTGAAAAGAGAATAAAAACAAACTCCAAATTGTTTCCAGTGGTAGAGGAGTAGGCAGGGGTAGTTCAGAATCAGTGTAACGCTTTAAATGGTGTACTCTTTGGGTTGGCTTTCAGTTTTGAATTAAACTAATAAACCATACAATTACATAAGCAGAAAGGTAATTACAATATTCATGTAATTGTGTCTCCTGTTATTTATTTTTACAGCCATTTGTAGTATTTCCTCTGCTCTCTAAACTCCCTAGTATACTCAGTGTGTTCAGATTACCATCTGTTCGCATGCAAGTAAACCTCATTAAGGAAAGAGAAAGTAGGACCCTGAACAAGCTACCATGTGCTGCGTACTCCCTTCTGTATTTGTAGAACAATATAGGCAAATGTTTCCATACCCGAGTAGGAAAAGTTCGGTATTCACCTAAGACATGAATGAAGTCATGCATATAGTTCAATGTTTGATATTTGGAGTATGAGGAGAGGCTTTGTTGGAAAGCTAGAAAAGGGATTTTTTTTCTTCTTCTATATTTAGTTCTTTGTTTTATGTCATCAGTGGAATAACCCTCTACTTTAAGCTGTGGAAGTTCTATGTTTTAAATTACATTTATAAATGAGTGTCTTATAACTGAAGAGTACGTGCCTTTAATAACTGATTTAATGGAGTAGAAGTAAAACGGAAGAAAAGTGATGTGCCTTTTCTTGAAACATTGTCATAAATCCTGCGGGCATATATAATTAAGTTTACCACTGCTTTGAAAAAAGTCCAGTATTTCATGTACATACAAGGTGATGAGATATGACATAATTCCTCAGCATGTGTACCACACATGATTAACATAAAGAACCCCATAATAACTCAGCCTTGTTTCAAAGTGGTCCCATCTGTGGTTTCTATGCAAGAATACATCCATATGCAACCTGAAGTACAAAGATCCATGGAAGTGCCTGATTTACTCTCAGGTACAAACAGATTATTAGTGAGTAAGTGCATGGTCCTCATCATATGGGACACAGCTTTTTGTTATACTTCCATCTAGATTCCTCCCCTCAACTTTTTCTCATTTTGTTGCCACAGTGGAATTTGATCTCTTTTAAGTTTAAGCATGACAGAGCTGTATGGGTTCTAGAAAATGGAGCTGGCATTGCAGTGTGCTTGCTGTCTAGAGCTGTTTTATCGTAAGCTTTCATTTGTACAGAGATTAAAGTCCTGGGGCTGAACTGGATTCTGTAGCATTCTGTTTGTGAATTACATTTCTGCTACCTGACTTCTTGTTGAATCATTTATAAATGACCTGCATTATCAGTTCTCTACTTTTCTTTCCAGTTCATACACAAATAGCCAATACCTATCCCATAGCTATGACAGCAGGCCACATGTTCACATCATATTTAAATAGAAATCAGTAAAAGATGTTGAGGTCTTTCCAGCCTATGGCAACTAGACTGTCAGTCTGTATGTTGGTAATCCTCCTGTATGGTTCCTGCCTGATGTGAAGTTTTCCATGCTTTATACATTAGGTTTGCATCCTGTGTAGTAGTGATGACAGGATTTCATGAAAGGCATGAATGACAGGGTTTTTTTGTTTGTTTGTTTGTTTTGGCAACTCAAATGAACAAACATTTCAAGGTGAAACTGAGAAAGGACTGAGACTTAAAACAGTGGACAGCTTTGTTCAATATACTTTATTCATTTAATATATGCTAATTATTGCAACCCCACTGTAATCCATGTACTGATGGACCATTTCTGAATGCTCAGAATGCTGTGGTAGGTAGCATCATGGTTGAGGCTACAGTCTTCCTGACAGAGTAGCCACAATAATAGCTGATACCAGTGAAAAACTTGCAAAACATGGTCAAGCAATTTTTGTTTTACCCAGTAGAAGGCAGGAGAACACATGCAAAATTCAAGCTCTACTGTTTTACTTTAGTGAGCCTGTTTCATCTCTTCTATCAGTTACACCACAAGTCCTGCCTGGAAGTTGTAACCTTATGTGAACGTCACAGTCTGCTGTCATAAGAAGAGCTTGATGCTACACCATCATGCTTTAACATCAACATCAAATCATAGAATCACAGAATCGTTAAGATTGGAAAAGACCTCTAAAATTATCTAATGAAACTGTCCACCTACCACCAATATCAAGTGGTAAAGTAAAAGGCTGTAAAATAAGCGTTTTTTTTACAATTGGCATGCAAAAATTCTATTTCTATTTTTAAAAATAAACTGAATAACATGTAAATATTATGTGCATTTCCTTTTTTTTTTTTACTGCAATTATGTATTTTTAAGTATTTCAGTAGTAAAAGGAAGACTGAGGAAAACATGGGCCCACTGCTGAATGAGGTGGGTTCCCTGGTAAAGGAGGACACCGAGAAGGCAGAGTTAACTGAATGCCTTCTTTGTTTTGGTATTTACTGCTCATACGACCCCTTCAGAATCACAGACCCTGGAGATAAGAGAGTGTGTCTGGGGAAAGGAAGACTTCCCCTCGATCAAGGATTGGATCGGAGAACATCTAGGCCAATTCAACACACACAAAAACATGGGCCCTGACAAGATGCACCCACAAGTGCTGAGAGAGCTGGCAGAAGTGGTTGCCAAGCTACTCTCTATCACCTTTGAAAGGTCATGGAGAATGGGAGAAATGCTTAAGCACTGGAATAGGCTCCCCAGGGAGGTGGTTGAGTCACCATCCCTGGATGTGTTTAAAAACTGTTTGGATGTGGTGCTCAGGGACATGATTTAGCAGAGGGCTGTTAGAGTTAGGGTACTATGGTTAGGTTGTGGTTGGACTCAATGATCTTTAAGGTCTTTTTCAACAAGAGCAATTCTATGATTCTATGACTGGAGAAGAGCCATGTCACTCCAATCTTCAAGAAGAGCAGGAAGGAGGAGCTGGGAAACTACAGGCCAGTCAGCTTCACCTCTGTCCCTGGAAAGGTGGTGGAACAGTTTATTATGGATGTCATCTCCAAGCAAATGGAAGAGCAGAAGAACATTATCAGGAGTAGACAACATTAGAGTGTTCACCAAGGGTTTTCCATGATTTGTTACATTCTGATCATTACACAGAAAATGTCAAGTTGTAGTTCTTAGCCCTGTGCTAATTTCCTCAAAGGTTCCTATCTACAATCATATATATATTGTACATCTAATAATAATCATAGTACACAATATACTATATTATGGTATAATATACATTATGTAATATATATTATTATATAATATACACTATAATAATCATTCTATACAATACAAATATACTTCTAGAGAAAAAGAGAAGATACTCGTTTTCCATACATCTTGTATGAGCCTCATTGTCTTACTTCAGCAACCCATGACCTTAGAAAAATCATCAGTTTTTTAGTGCATGGTTTTCCAAGGTGTTTTTTACAAAGCCTTTCTTTGAAGGTGAACAGATTTTTTTCAGCGAACCGTCTTATCACAAAAAAAGTACACTGTCTTGGAAGTTAATTTTTTTCATGTGTACTCCAGGCCACAGTCTCATCTTTAAGTGGTGACTCTCCAGAAACTACATATTTGGAAATCCAAACAGGGCGTGTGAGTGGATGAAAGAAGATGCTTGCTGTAGATCTGCACGTCTCATGTTATCAGGATCATAGGTTGGAAACTATGGACTCTGATTAGTGTAAGAAGCAAGGAATATTAACCCAAGTATAGTGGTGCAGTAAGTTCGTGGTGAAGCTTTCAGACCAGAATCCCCATATTGATGCTTCATCCCCATATTGATGGACAACCTTATGTATAATCTGGTATAAATTGGAGTAGCTCTGTCAGTCGTTGTACAACCTGTTGTTGATATCAGCTGAGAAATAAATTGAATTTCAGTTCAAAGGGATTTCAAATTTAAGGCCAGAAGTTAAGGTTAGTAACAGCATTATAATTAAAGAATTCAAAAGATGGATGAACTGTTACTGGGTGTCCTTACTAGTAAATTTTTTCTTGTCATGGTCAGAAACAGCATAGGTAGAAAAAAACCTTGTCATCCTTGCCTGGAAGCAGCAAGGCAAGTACTCTTTTACGATAATGGAGAGGTATACATACATACAGGCAAAAAGCTCAAATGTCAGGATACTGTCTTTAGAAAACAGAATAGGATTTGTTTTACTATGAATAAAATTTGTCTGCAAAACAACAATTTGTCTGCCTTCCCTGGAAGAACTCTCACTGAATAATTCAGTGTGGATTAAGTAATTAATTTTTCATATTGTTGGCAACTGACTTTTGTCCAAATAACTTTGTTATAGATCAGACTTGGATAGTATTCCCATTTTGTTTCTCTTTCTTATTTTCTTCTATTTTTATTTTTCACTAGAAACCACAGGAAGACATTTTTGTAGTAAGGATATCATTCCTGCTGATCATATATCATTTGTGAGCCGAGTGAATTTGTTCCACATGTCTTTTGAACATGTACAGCACAAAATGTCTGGTAGTATAATCTGGTAAAGAGATGTCTAGTATATTCTCATTACAGCAGTATATGGGAATTAATACAGTAATGCACATAAATACTTTCTGAGAGATGAGAGTGAATTCCACCTCTGATTTTGCTTTAGATAAAGAAGCTTTGCTTTGTTATTCAGTAGTGAAGATCAGAGAATGTCTCAGAAGAGAAGGAAGAATAAAAGAGGAGAAATATTGTTATCTGTGTGTTCATTAACAGACAGTTTTTTACACAGTGCTCTGCCATTGCTTTGGAAATGGAGATGCTTGGTTAGAGATTTGATGTCTGTGCAGGAGGACATATCTATGTATGTACAATACCAGCAAAAATAAGCGTTGGCTATGATTGCTGTGAGAGCAGTGCACTGATTTAACCTCTAGGTCACTGATCAATCAGCAACAGGTCGTTGGGATGAAACAACTCCTTTTTACTGCCTGATTGTACTAAAGCTATTGTCATTATAATTTTGGGGGGATGTGATCTGTTAGAATACTCTGCATTTCTCTCTGTTGCAGTTCTGCTTGAGTAGCTAATAGAGCATCTCTGAGTTAGAGCTAGTTTTCTGATTTCTCCTCCTAACCTTTAACTTCACTCCAAACAAAAGAATTTGTTTGTGATCTTTCATTATTTACTAGATAAAATAACTAAGTTTCTTTCTTCAGTAAATTTTGCTATCTGCCTTTTAGCCAAATAAAGTAGAATAGTTTTGCAAGGTACTTTCCACACAGGACATTATCTTTAATCTGCTTGGCATTTACTGCCTGACTTACTTGGTACAATAATTAAGTAAAACCAGTTGAGTTTTTGTCTTTCTCTGCCACACTGTTTTGTTAACAGGACTTAATGCAGTATAACTCAGTAATATCACTAGGAATGTAAGCAACAAACTCACAGAAAGAGTAGCATAAGGATTTTTGAGTAAGATTTATCTAAGCCTATGGGAACTTATGATAGGTGTACTGAAATTCCTCCCGCACAATTTTTAGAAGTTCACTGTCAATTGAGTGGGCTAACAAAACTTCTTTCATCATCAAGGAAGATATATTGGTACCTTTGGGAAAAGTCCACGTAAGATTTTAGAGGAGTCTGCCTTAGGATGCACCACAGCTGTCACTGATTGTATTAATTCTGTTCTCCATGAATTAGAGAAGTCTGTAGAAAAAACATCATCCAATTGATCTTCCACTTTGACACATCATTCCAACCTGTGCTGCCTCTTGGATAAATGTTGCTGCAACAGCTTTCTATTTTGGTCACCCTTACCAATGTTTTCTGTTTTACATGTAG
Seq C2 exon
GAGCCAAGCCTTGGTCCAACATCATGGAGATCCTGGAGGAGAAAGATGGGGTTGATACTGAACTACTGGTTTATGCCATGACTTTGGTTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013124:ENSGALT00000037064:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(10.9=39.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]