BtaINT0062544 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017982 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr11:101191053-101200648:-
Coord C1 exon
chr11:101200577-101200648
Coord A exon
chr11:101191533-101200576
Coord C2 exon
chr11:101191053-101191532
Length
9044 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
GCGCCCGGGCTGGCCCGCAGCGG
3' ss Score
4.83
Exon sequences
Seq C1 exon
ATGGTCAACGACCGGTGGAAGACCATGGGCGGCGCTTCCCAACTTGAGGACCGGCCGCGCGACAAGCCGCAG
Seq A exon
GTACCCGCGGGCCCGGGGCGTGGGGATACGGGGGTCCCGCGCGGTGGGCGAGGCGGTGGAGGCTCCAGCCGGCGGGCTGGGCACCCGGGCTGGAGTTTGGGGCGTACCTCCCGTGAGGCTCGACAGGCCCGAATTGGGGCGGGCACCGTCCTCGGCTCCAGAGGAGACACTTGAACTTGGGGTTCGGGCTGCCGATGGGGGCGGCACCCCTGCAGGAGCCCCCTTGCTCCTCCAACGGACTCAGGTGCACGCCTGCACAGAGAAAGTAAGGGACCCACAGAGTTTACAGTGTCACCAGCCCTTGAGCGCGAGCCTCTGTTTCCTCATCTCTACAATGGGCATCTGAACCATTTACTAAGTATCCCACCCTGGGCAGCACCCCGTGCCAGGCGCCTGGCATGCGACACCCTCCCCTTCATCTCCTCTGAATCCTCACACTTTAGCCAGCCTATCCCTACCCCCATACAGCAGAGGATCAATAAATATTTGCCTCTTGTAAGAACACAGGATACTGTGATTCTCTAGCCCTAAGACAAGGGAAGCAGGATTCAGAGAGTTGCTTCTGCCCCAGGCCTGTGGCTCTGCTGGGATTTGAACCTCAGGTCCTTGGGCTGCAGGTCTGTTCATCCCATGCTTTGTGCCCCCTCTTCAGGGGGCCGTGGAGGATGCCCAGGGCTGTGCACTGGAAGGGGGGTGAGGACAGAGCTCCAGGGCTGGCCGGAGAGGGGGCTAGGGATGGGAAGCCGAGTGGAGGGGCAGCCCTGGGGCCGCCCCAGGCTGGGCTGCCAAGGGACTGGGGCAGGCAGGCGAGATGCCGAGGTCTGCTAGCCAAGGAGAGGAAATAATGGAGCTGCCCGTTTTAAATTTCAAATTTCTCCCAGACAGATGTCATTGGGGAAGGAACAGTTCTTGTTTGCAGAGGCAGGAGGGGGGTGGCAGGGGCGGGCCTTGGCGGGCCCCTCACTCTCTTGGGAGCGGCAGCCTGAGTGAGCGTTGTCTGGAGCCACATGCCTCCACACTTTGCAAAGCCCTTTCCCAACCGTCTGCACAACCTCGCTGTCGGCAGCAGCCTGGGTGGGGAGGCAGGGGTGCACGTGCCCTTGTCGCAGGAGAATGGTGGTGCAGAGAAGTCGAGGCATGCACCCAAGTCACACAGCATGTTAGCGGAAGAGCAAAGTTTCAAAGCCGGGACTGACTCCATGCCTCTCCCAATACCTCCTGGTCCATTCCCCTTTCCTGTGAGCCCCCTTACAGGTACTGACTGCTTGTCATTTGCCAACAAGCAAATGACACCAGACTGCCTGTTTCCAAACGTTTGCTGCCTCATTGTCCCCCAAACACACACACACAGAGACACACACACACACACACATACACTTCATTCAGGGAAACCCTACATATACTTCAAAACCAACTCAGATGCCACCTCCTCCAGGAAGCCCTCCCCGATGCCTGATGCCCCGTGGGCTTTAACTTGATTCCCAGCAGCAGTTAGCCTGTGCCACTCAGCTGCCTTTATCTCCCTGCCTTGTTCCCTAGCCTTGGTCCCTCCTCTAGCAGGAGCTCCCTTTGGACATATGCTTCTTCTGGGCCCCCATCCTGGGGTCTCCCCCTGGGTCCAGGCTCCTGTCTTTCCATGCAGCTCAGACCGGGAGTTGAGGGATTTTTGCTGAATTGAGCTGCATGAAGCCCGGCCAGAAGGAGCTGGGAGAGCAGCGAGTGCTGATGTGTCTCAAGGGGAGGTGGCTTCTGGGGGATGTATTTGAAATGTGGCTTTAAGGCCTCCTGGGTCAGCCCTGGCCTCTCTGCTGCGTCGTGGGGTATATATTCCAACTGCCACCAGGCCAGAGCTCAGCTGTCTGCCCCTTGGCATCGGAGGCTGCCAAGAGCTTGTGGTCCCAGCGGCCTGGGCCAATATCAAACACCACCTTCTCACTCCACCCCTTTGGTGATCCAGCATGTTAGACAGGCTATCCCATTGCCAGCTCCAGGCTTGTCTGAAACTTCAGGTAGGAGGCAAGCCCTTTCCTGTGCCCACCATCAGAAGGGAACCAGGGTTCCCTTGGGCCTGGCCTTCTTGCATCCATTGCTTCTAGTTTCATCTCCACCACTGACATGCTTTGTGACTGGGTAAGTTATGTCCCCTCTCTGAGTCTGGGCTTTACCAGCTGTAAAATGGGAACAGCAATCACTGCTTCCTCCTCACTTCACAAGGACTTAACAAGAGCTGAGTGAAATAATGGTATGCTTTACAAATTGTAAAGCGCTGTACACCCTTGAGGAAGGTGGTTCTCAGAGCAGCCTGACCCCTTTGCCAGGCTGTCAATGTCCTGATCACCCCTTTGCCCACCAGGGAAAGCAATATGACCCCCCAGTTCCCTCCAGAAGACTCTGACTGAGGTTCTCTAACAAGGCACTTCCTCCAGAAAAGGTGCCAAAGCCACAGTCTGAGTGCCAGCTGTGCTCATCTGCATAACTTCTCGTTTCTGAATCAAACCACTCTCAGAGTTTGGCAGCAGGAATGATCAACCCATTAAACAGATGAGGAAACTAAGGCTGAGAGTTGCAACCAGGACATGAACTTGGGTGGCCGATGAGCCTTTTTGGGAAGACTAAGGGAAGAGAGGCTGGCTGCCCTTGGCTCCTCCTGCTTGGGCACATTATGTAATTCCCAAGGAGAGGGCTCTGGTACCTAGTGCGTGGTTCCCCAGGGCACACACCGTACCCACTGCCATTGAAGGGCCTACATCCAAGTGTTGCTGTTTCTGCGGACAGCCTCAGGCCGGCTGTGTCCTGGGCCTGTCCGGCCTCAGCTCCTCATTTGCCAAGTGACCTTGGACAAGGTGCCAACTTCATTAGAGCTTCACTTCTTCCCCTGTGAAACCAAGGGGCTCTCACACCCTTAGGGCAGCAGGTGATGGTGGGATATTTGCCAGGAGTTCGGAGTTGCTCAGATAAAAGGACCCAGAAATAGTCACAATTCTCCTAATCTTCTAGTGTGGGGCAGAAAGTCACCCTGTAACTATCTCCTCTTGTTGCAGGGGGGCGGGGGGGGTGGTGGCGGGGAGGCTCATTTCTGAGCAATCCCTGAGTCAAACCACCCCACAGGGAGGTCAACCTCTGAACCATCCCAGGCAGTGTCTCTTGATATTTTCAAAACTTTGAAAAATATTCCAGACAGGGAATACAGTTCTCATTGGGAAGTTCTTCTTGATGTCTAACCTAAACCCTGCTGCATTTAATTCACTCAGTGGCTATTTATAGAGTCGCTCCCTCCTCTAGGAGAGACAGCTGTAAACCTGTGCCTTGGGAACTTCTATAGAGTCTCTTGGGAGGAACACACTCGCATCATGGGATTATGACAAACCTCGATGGGCACTGTAAAGAAAACCATGCAGCCTCGGTCCTCATTGCCTGGGCTTTGGGCGGAGGTCACTGTGTCCGGGTTGGATGAGAAGGAGGCTGAAGAGAACAGGGCCTTCCTTCTCCTTCTGTTTCCTGGGCCCCTCTCCATGGAACTCACCCCCAGACCAGCGTGCGGCAGTGATGAGGAGGCCGGAGGCTGGGGTGGGAGGTCAGAGACCACTTGGGCATTTAAGCTGGACAGCATCTGTCGGATCTGTGACACCAATGTGTGTTGGGGGAAATGACAGAGGGGGCGGCCCAGGTGATGCTAGTGGTAAAGGGCCCATCTGCCAGTGCAGGAGACGTAAGAGATGCGGGTTCGATCCCTGGATGGGGAAGATCCCCTGGAGGAGGGCATGGCAACCCACTCCAGCGTTCTTGCCTGGAGAATCCCATGGACAGAGGAGCCTGGCGGGGGGATATGGTCCATAGGGTCGCAAAGAGTCGGACTTAGCATGCAGGCAGGCGGCTGGAGAGAGCTGGGCAGGAGTGGGGGTTGGGGGAGGGTGCAATAGCGGAGGCTGGGGGTGGGGCGGGACCTGCTCCTGAGGCCTCCGCAGCCCCGGAGTGGTCTGGCCGGAGTGTCCTGGGCTTTTTGCCATCAGGAGGGTCCTGGGCCTCTGGGTGGGGTATTGGTTGGTAGGGCTGGGAGGAGGTGGGGAGGCTAACGGGGAGATGGTTGAGGTGATTTTAAAGCAGACGATGGGGCTTGGACCATATCAGGGCTGGGGGGCCATAGGAACAGAGGGGCCCTGGGGATTCGAGGAGGTAAGAGTGTACGCAGCCAGGTGCTGGCTGGGGATGGGGTGAGGGAGGGGAGCCCAGGGAGGTCCCCGGTTTTGGAGGGGGCTGGTGAGGCTGATACCATCCCTGGGTGGAACTCTCAGGAGGGCTCAGGTTTGAAGTGGAATGAGCCTGGTTTAGGGGTCAGTGGGCTGGAGGCCTGGAGATCTGGGGGGTGGGGAGGGTGAGCAAGACCCTCACAAGATACATCAAGAGGCCCTCCCTCATCGGAAATGGACTCAGAGCTGAGTGCTCTATGGGGAGTGACAAGGCTGGCGGCTCAGCTCCTTCGGGAGGGGTGGACGCAGGCAGTTCCCAGACCCTTCTCTTTGTCCCTAGAACACCTCCGGCCAGTCTCCTGGGGACTTCCTGGTGGCCTGAGGCTTCAGATGGCCTTCAACGTGGGTCATGTTCAGAGGCCCCTGGCAAGACAGGGAGCTCTTCCCCCAGGATTCATAGAGTGAGCCAGCAGGCCCTCTTCCTAAATCTTTGGGACCCCACCCAGAATTTTAAGCAGAACAACCACCTCCTCTTTTTAAGGGGTCTCTGGGACCCTCCTTCTGCCAGGGCCAGAGCATCAGAGCCCAGCCCAGGTCAGGCGCTGTTTGCCTGGCTGGGGCAGCAGATGTGTGTTCCTGGGGAGAGAGGAGGAAGACTCCCCCAGGGCCTTTGGGCTGGGCAGGGGCTGGGCTGCCCCGCTCGCGACGATCCATGAGCCCAGGTGCAACTCTGAGTCTCTGCCAGGCTCAGACCACACTGCCGCACCTTGGCTTTCTCAACATAGACCCACACAGTGGGTTTCTGGGGCTGGGGTGCTCCTAGGAGATGGGGGGCTGTGAGCGGCCTGCACCTGGATCTCACCTTGCCTGGCCTCCCCCTCGGGGAGGTTTTCTTCTTCCCACTTTGCTACAAGAAGTGTAGTCTCAGCCTACTCACGGGACCACAACCCAGCTCCCTTAAAAAAATAGGGAAAGGGACTTCCCTGGTGGCCTGGTGGTGGCCCCCTGCACACTCCCAGTGCAGGGGGCACAGTTTCAATCCCTGGTTGGGGAACTAAGATCTCACATGCTGCACAGTATGGCCTTAAAAAAAAACAAGAAGTGAGGTGCAGTGCAGGCAGAGCACTGTAGCCGTGAGCCCTTCCTTCTCTTAGTCTCAGCCAGACCCTGTGGCCATCCCTGGAGGCTGGGGACTCAGAGGAGGCAGTCGGGACACATACCACCCCTCTAATGAGGCAGCTCCGGGGCTTTCTCCTCCTGCCTCCCCTGGCGTGAGCCCACCATGTCCTACCCTGGCTGGGGCGTCCTGGGCCGCCTTGGACCACGGGCCAGCACTAGGGCTGATGCAGGGGACGAAGCCACATCCCCCCAGCCGGAAGCTTGCACAGGCGTTTAGCACTAGCAGCAGGTCTCAGACCCTGGGGTTCCTCGAATGCCCCCCACCCCCCTCCTGGGATGCCTTCCCAAACTACAGGCTCCTTGCCCCGGGAGGTGGGAACCCCAGGCATGCACCGCTCTGCCCCGGCCAAGGGCTGATGAGTTAAACGCCAGCCCCCCACACTCTCCGCCGGGCAGCGCGCACCCGAAGCCCCCCTTATGGTCTCGGATAGATTTCTTTGCAAGGCACGTAAACTGCAGCCTATAAAAGCGAACAGCACTTCACGTTTAAGGTGATCTCTGAAGACTGGTTCTCCTCTGCTGAGTGGCCGGTTTCATCTCCAGGCTCCGGCATCCCCCTGCCCCTCGGGGGACCCCCTGCAGCCTTCTGCAGCGCGCCCCCTCTGCACCCTTGGCCTTCCCGCCAGGGACCAAGGGCCTGGGTGGAAGCAGATGCCCAAGAGGAGCTGGGGATGCACATGGGGGACGTGGCTGGCTGCTCTGCCTCCCCAGCTGGGGACCTTAACGCTCTCCTGTGGAGGACGGCGCTCAGAGCTGCTCGGGGCAAGGTGTCTCTCGATGGAGTCCGGGAGGGGACTGACAGGGACTCACTGGCTGACACAGGGCTTTGTTTCAAACCGGGCCAGGCTTCCCACAAGGCAGGACTGTGGTCAGATGGCTCAGCAACAGCCGCACAAACAGGCGATGGGTTTGAACCCAGTCACCCAGGCCTGGGTTCACATGCTCCTGTGACCTTGGGCAAGGCTCTTCACTCTTTGAGCCTCAGTTTTCCCATCTGCAAAATGTAACCAACCTCAACAAGGGGATGTTTGGAGGTTTCACTGGTGGGAACACAGCATAAACTCAAGTAATAGCGGTGATGAGGCAATGCCCGCCCCTGTGGATCCTGCCGACTCGTGGCAGGGTTGGGGCAGCCTGGAGGCAAACTTCATTCTGTGCCAGGCCATCCTGGGTGGGCACAGGGCTCAGCATGGAGGTCATGATCCTCTGCCCTGCCACGCACCATGGGTCCCAGGGCCTTCACCTCCTCCCACGCCAACAAGGTCATGGAGAAATGACCTAGCCCGACTGTCCTGCCCTCCATCCATCCAACAACCAGCCGCTCTATGCCTTTTGGGGGAGTGGGGGGGCTCACGGTTTAGAGCAGGTTTCCTAGATCTGGGCTCTGCAGGCCCCAGAATTCTAGCTTTCTTGTATCCACAGCTTTCATCATCTCCAAGGGGAGCCATGCCCCCAAAGAGGGTAAGAGTCATAGTCCATGGGACACGAGGTCCCTACGGGCAAGGCTGGCATGACTGTCCACTGCTACCCCTCAGGGACTGGCTTGGACGCTGGCTCAGGGGGAACACCAGGTAATACTGAATGGATGTTTGAGTGAATGAATGCAGTCAAAGGTGATGACTGTATTTTTCAGCCGGGAGCAAGAGCTGTGGAAACACTGAGGAGGAGCCTCACCCAAACTGGGAGGAGGGCTGAGGAAACAGTCTAGGAAGGCTTCCTGAAGGAAGTGACATCTAGCTGAGCCCTGAAAAAAGAGAGTTTAGCTGTGGAAGAGAAGCAGGGGAGGCTGATGCCTCGGGCCGAGGGAGCAGCCTGTGTAGAGCTGACGGAGGGAAGCTGACGTGTTCAGGTCTGGCTGGAATAAATTGTCCCACTGTGTGGAGTCCCAGCATGTCTGGGCAGGTGTGGGGAGAGGTGGGGTAGAATGTTGAGTCCCATCACTGCAAGGACAGGCTAAGGAACCCTCTCCCTTGTCTCTCCAACAACACAGACCCCTGACCCCTTCCTCCTCTGGTGCCAAATGGGAGATTCAGGAGTTACTTGTAGAATTTGAATTTAGGGAAAAGTAGCTATTTGCTCTACCATATTTTCTCATAGAAAAACACTGTATATAAGAGGCTGTTTTTTTTTTTTAATTTGGCTGCATCCTGCTGCACATGGGATCTTAGTTCTCTGACCAGAGATCAAACTTGCACCCCCTGCAGTGGAAGCATGGAGTCTTAACCACTGGACCACCAGGGACGTCCCTAGAGGCTACTTTATGTATCACCAAGAAAGAAAGTTGTCAATCACAATTGTAAGATCCTCCCATATGTCAGAGATGTTGAGATATGGAGATAAAAAAAAAAGGGGGGGAAGGGACATTCTAGCATCAGTGACACAGAAATAGCACTTTGGGTGGAAAATAAAAAACCCGACACCTCCAGATGCTCTGTGCACATTGATCACGAGATAATAAAAGCCGCTAATATTTATTGCGCAAACACAGTATGCCAGGCATGGCTCCAAGTGCTTTAATATACTAACTCATTTAAAGATGCCTCTTGGATTCAGAAAGTTGAAAATGTGGGGCAAATTCAGCGCTTGGACATTCCTGGCCCCGGGAAGAGGCGGGAGGTGGGGGGTCCAGTCCAAGCCCAGCTTCTCATCTGCAGGGTGACCGTGGGCAAGCCCCTGGCCTTCTCTGGGCCTCGGTGTCCCCGTGTGTCAAAGGCTGTGATTGCTCTGCAGGCTTCCCTTGGGCCGTGAGTGATGCGGGCCAGTGAGTCTGGATTTGTGCTCCATCACGGTGCCTCCTTTAATTACAAGCTGTACTGGGTCCAGGGGGTGGCGGGGGTGCTTTGTGAAAGAGGGGGAGGAAGGAAGGGCAGGCAGGAGAGGAAAGGGGGTGGGGAGGTGCTCGGGAGGCCATCCCCGGCCTGCGGACTCATGGCAGCCTCGTGGGCCTGCAGTGGCTTCAGGACGCGGGGTGTGGGTGCTCTGGGTTGAAAAGACCGTCAGTGACAGCAGCCCATGACCCCAAGGCATCCATTCCGCTGAGACAGCGCGATGATTTGCAGCATCGCTGTGTCACCATCGCAGCTCCCCCTTCCCGAGTGTGCACGGCATCGGGCGCCTGCCTATGGGGTAGGCGAGTCATCATTGCCCCCATTTCACAGATGAGGACACCGAGGCTCAGGGAGGCAAAGACCTTCACTCAAGGTCACCCTGCAGAAAATGACAGCTTGGGGACCTGAGCCTGGCCTGTCTGGCTGCAGAGTGGGAGTCCACCTCCCGCTCGCCCTTACTAGACCTGGGAGGGCTCCATGTGGGGCGATGTGCCCACCTGGGGCAGGGGCAGCGAGGGAGAAGGGACTGTCCCTCTATCTCCTGGCTCTCTGCCCTGGTTCCTCTTGTCGCCATCCCCATCTCTGTCTCCCTGCCTCTCTTGCTGTCTCGAGCTCGCCGTCTTTGGTGGCAGCGGGTGGGAGCCTGTTTCTCTGTCTCCCTTCTGGGGCTGTTTTTCCAAGACTCCCCTCCCTCATGCCCCAGAAGGAGGCTCGTCCAGGCTTCACAAAGGGCAGAGGGCCCCGTCCGAGGGTTGGAGCCGGAGGCCCGGGTCTGCCCCTGACGCTGTTCCTTCTCTCTCCTGTCTGTCCCTGTCCGTCTCTGCGTCCACGCGCCCGGGCTGGCCCGCAG
Seq C2 exon
CGGCCGAGCTGCAGCTACGTGCTGTGTACCGTGCTGCTGTCCCTCGCCGTGCTGCTGGCTGTGGCGGTCACCGGTGCCGTGCTGCTCCTGAACCACGCCCGCGTGCCCGGCACGGCGCCCCCGCCCGTCGTCAGCACCGGGCCGGCCGGGGCCAACAGCGCGCTGGTCACCGTGGACAGGGCCGACAGCTCGCGCCTCAGCATCCTCATTGACCCGCGGTGCCCTGACCTCGCCGACGGCTTCGCCCGCCTGGAGGGCGCCCAGGCCTCCGTGCTGCAGGCACTGAGCCAGCGCCAGGCCGAGCTGCGGCTGCCGGGTGAGCAGGAGCAGGAGCTGCTGGACACGCTGGCGGACCAGCTCCCTCGGCTGCTCGCCCGGGCCTCGGAGCTACAGGCCGAGTGTTCTGGGCTGCGGAAGGGGCACGGCGCCCTGGGCCAGGGGCTCAGCGCCCTGCAGAGCGAGCAGGGCCGCCTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017982:ENSBTAT00000023924:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=NA C2=0.144
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF104734=CENP-F_leu_zip=PU(72.8=46.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development