MmuINT0064510 @ mm9
Intron Retention
Gene
ENSMUSG00000026841 | Fibcd1
Description
fibrinogen C domain containing 1 [Source:MGI Symbol;Acc:MGI:2138953]
Coordinates
chr2:31693818-31701525:-
Coord C1 exon
chr2:31701231-31701525
Coord A exon
chr2:31694292-31701230
Coord C2 exon
chr2:31693818-31694291
Length
6939 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCC
5' ss Score
8.63
3' ss Seq
TGTCCTGGGCTGACCTACAGCGA
3' ss Score
5.55
Exon sequences
Seq C1 exon
GCGGGACGCGGGGACGGCGCGGCGCGGGCGGCTCTCGGAGGCTCGCGCCCGCGCTCCCAGCAATCACACGCGCTCACACGCAGCCTAGCTGGCGGCCGCCGCTCCCGGGCCACCCCGGATCCCCGGCACCGAGGGGACCTCCTGCGAGTGCAACGCACCCTGTGCACCCCTCGCCTCCTTTGCACTCGCCCTTGCCCCGCAACCCCGCTGGTCTTGCTGGAAGATGGTCCACGAGCGGTGGAAGACCGTGGGCAGCGCGTCCCAACTTGAGGACCGACCGCGCGACAAACCGCAG
Seq A exon
GTACCCACGGGCGCGGGGACGGGTGTGGGGGCTGGAGTTTGGTGAGCTTGTGCAGAGCTTAGTGGGAGCACCTGCTCTCCTCCTCCCCTCAGCGGAGTCTTGAACTCTGGGCTCCCTGCAGAAGGCACCCGCTGCAGCCAGTCCCCACCCCCACCGGAGACCCCTGTGCTTGCTTGTGCAGAGGGAAGAGAAGACCTATAGTTGGTTGTGGATCAGCCCTTCAGTTGGGGACAGCCAACAGATGACCGCGCGCAGAGTCCCGTTCGCCCACAGCCTCAATGGGGGTCCTCCTCACTTGAAATTCCTTAACCTGTGCCAGGCGCCCCGCACATCTTTCCAGGCTTCAAGAACAGGACCGGCCCCCCAGATCCGCCCTCTTTACCTAGGCGCCCAAATTCAATTGGGGAACAGTAAATATTAATCTCCTATAAGAAGCCTAGGCACTGTGATTCTCTGACTTTCAGGAGAGCAAGGCTCAGAGAGGTCCCGCTGCAGCCCGAGGCCACGAAGCCCTACAGGGATTTGAACCTGGGTCTGGCTGATCCTCTCTCCCTACTGCCTCTGCAGGGACAGTGAAGTGTCCCGGCTTGGAGGATGCCCAGGGCTGTGCACTGCACCAGCTGGGACAGAACAGGGAGGGGCTGCTGAGGTACTGGGCATCCGGAGTCGGAAGCAGAGGGGTGGCCGCAGGACTGCCCCAGGCTGGGCCATCAAGGGACTGGCATAGACAAGCGAATTGAGGAGGCCGTTTGCCAAGGAGAGCAGATAATGGGGCTGCCCGTTTTAAATTTTAAATTTCTCCCAGACAGATGTCACTGGGGAAGGAACAGTGAGAGTTTGCAACCAGAGAAGGAGGAGGTGGCAGGGGTGGGCGTGGCCACTCCTCACTAATCAAAGCTGCAACCTGCCTTTCTTTCCGAGTAACACTGGTCTGGTAAGGGGACCGGCTAGCTTGTTTGCAAAGCTGGCTCTTCACTAGTATACACTTCCCATATCCCAGATGAAGATCAGGGAGGTTGAATATGCCCAAGCCACACAGCATGTGGGCCAGAGAGCAGGGACTCTACTTTTCTAACCTCAGACTGGTTCCATTGCCTCCCTGGGTGGTCTGTCCCCCTTCTTAACTCTTCCAGTCTTCACTGTGTCCCCAGGTGGCAGGGCCCTTCCTGCTGAGATCTTAAAGGAGCAGTGGAAACTTCAAGGCTACCCCAACCTGGTCCAGTCTTCCTTCCTTTTGGTATCTTAAAGATCCTGACTGCTATTTGCCTCCCTGGGCCGGATCCCACGTCCAGACATGTGCTTTCTCATTTGATTGACACCACCAGGCCTCCAAACACTGCACACCCAGGGACACCCTACCTGTTCTACAGAGGGTAGGAAAGAGGCTGCTCCCTCTTGGAGGCCTCCCTGGTTGCCTGGGGTAGGGCTCTTAGTCCAGGCAATTTCATTGTTTTTTAAATTGTGCCCCTAGCTCTAGTTCCCTGGGGCCACAAGTTCCCCCATTGCCCCCTGCCATTGCCTTTTCCAGAAGCCCAGCTGAGGTAAGGGCCATTGCTGAGGTCAGATGCTTGAAACTTCGCCAAGAGGAGCATGGGAGAGGAGGGATGGGGATTTCTGGGGAGTCTGCTAGAAATGGGGCTTCAAGGTGTCATGGGCCAGGTATGGCCTCCTGGACTCTGCTGCCCCTGGGAACCAGCTCCCAGCTGCACCAGGTAGAGCCCAGCTGGGCCTATGCTGGGTATGGGGGTATTAGTCACCCCTTCCATCCTCCGTGCCCGCTGTGTGTTGTTGTGGTCACAGGAGGCAGGGATGGGAGGGAGAGAGGTGTGCCTCAGCACCCCTGGGGCCTTCTTCCTTGTTTTCTTGTCATATTGTGGTCCCTGACATGCTTGTGTTCCTTGCTGGTGCATCTGTGAGAGGGACCAACCCTTCCCTCTTCTTCCTCACACCCCCTGAGCTGCCGAGGAAGACCAGTGAGCTTCTGGTGTATTTGTAAACCTCGGCGTGCCACGCACCCACACAGGCTGGTTCTCCCTGCCACAGCTCCTCTCTTTGCTCCCAGGGTGGGATAAGTGCAGTCTCTTCCCACTGGAAGGAGACTGCTCCAGCACCAGGCTAGCTCACACCCTTGCCTGTCATGTCTTGGTCACACCACCCTAAGAGACTGCAGATATAACAGATGAGGCGGCTGGGGCTAGGCTCTCTGGTAGGGGGACCAAACCTGTGAGCTCTGGAAGCAGATGGGGCAAAGGGGAAGGGACAGAGGGAGGGGGGCACCCTGTTCTTCCTGAACCGGCTGCTTCCAGAGCTTGGTCACTTAGCCAGGCCTGAGCGTAGCATAGGTTTTCACCCTTCCTCCCGGGCAGGTATGGCTGCTCCTGGGAATCTCCTTGGGCCTGCTCTTCCTGGCTGTTTCAGAACTGTCTCCTCATTGGATGGATGACCTTGGCCAAGTGGCTGATTCCAACTTCATTAGGGTATCATTCCTACCCCCTGTACAGGAAGGGTCTTGTGGACCTTTGGGCAGGAAGACGAGGTCTAGTCAGGTGTTCAAATATAAGACTCTAGAACTACACATGGGCTTCCCCTGGGATCTCTGTAAGGTGTCACCCTGGACCATCTCCTTGGAGGGAGTGGTGACTTCTTGCTGAGCGGATCCCAAGCCAGCCTCCGGCAGTCAACCTCTCAAGCATGCTTAAGCCTGTGCTTCAGTTATTTCAAAACTGGAGATGATGGAGCTGGCGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGGCAGCCAGGGCTACACAGAGAAACCCTGTCTCGGAAAAAAAAAAAAAAACCCCAAAACCAAAAACCAAACCAAAACCAAAACCAAAACAAAAAACAAAAAACAAAAAACAAAAAACAAAACTGGAGATGTCTCAGAAAGCTACTGTGGGAAGTCCTTCCTGGGGGCCAGCTTTAATCCTTGTCCCATTACTTCACTTCATGGCTATTTGTGGAGACCCTATATCATACCAGGAGATGCAGCCCAGGAGATGCAGCCTAGGCCTCAGGGAACATAAAATAGCCTGGGGACCAACCTACAAGTCAGGAACTGCCACAGGCCATGTGGATACCACACAGGGAAGTCTTCTCTTTCTTCCCATTTATGAGATTATGAGAAGTCATCATTGGATTTGGTATAGAAGGGAAGAGACCACCGGAGGCACCCCCTCTTCAGTTGTCTCTTGAGTCAGCATGGCCTGTCTGAGGCTCCCAGGCCTGGCAGAGATGACCATGGAGAGTCACATAGAGCTATGTCAGGGGAAGGAGCAGCAGACACGGGGAAGGGTGTAAGGGGCAAGTGTCCTGTCTTGCTCTGTGTTCAGGCCACTGGTGACACTGGTTTTGAAGCAGGTGATAGAGATGTGGCCAGGTTGGGGTGCAGAGCTAAGGCTCTCGTGAACCATGTGGAGGAGGGGCAGGATCTGGGGGGCCCTTCACAGACACCTGTGGAAACCCTTTGCCAGCAGAGAGAGAGAGCCAAGCCACAGGATCCCCTGGAGTGACAGTGTGAGTATCTTAGAGACCCTAGGGGTCACCCATGCTGCAGCAGCATCATTTCTGTCACCTTGGGCACCTTCAGTGGCTGCTCCTAGAACCTTCCAGAAAGCCAGAGCTCCCCAGATCTCCAGTGCACAGTCAGCAGCACCATTCTGCCCTAAGCACAGCTTCAGCCTTTGGCTGAGGCTCCCAGAGGGGAAGACAGAGTGGCCCTCCAGACACCCCGCCTCCCTGGCCCACAGGAGACATCCTTGTTCCGACTGACAGCCAAGATGAGGCTCTCTGTCTCGGACCTGTGGGGCTTGCCCACCAGGGAAAGCAAGCAAGCAGGAGGGGGCGCGTGCCATATGGGGGATGGGGGTTATCCGGACCCCTAGGTATTGAACCTCGTCCTCCAGATTCCAAGTTCTCAAGGGCTGATGGCTTCAAGATACAGTCTGGACAAATGTTGCCTCCCAACAGAGGTGTTCTGGGAGGCTTCTGCCTCCTTCCTCAGACAAACCCCACTTAGCTTTCCTTTGGACAATGGCTTAATTTTTTTCATTTGTATTTCTTTTGTGTAGGGGGGGGCGGGGGGGTTCACCTGTCACAGCATGTGTGTAAAGGTTCGAAAGACAACTTTTGGGCGCCAGCTTCCCTTTCCTCCTTTGCATGGGCTCTTGAGATTGAACTCAGGTCGTCAGGTTTGCCACCCCCCTTACCTGATGACTGTCTCACAGGCCCTGCCAAGGGGTGCGTAGGGAGCCGCTGCCGCTGCTGCTGACCCCTATAGCGGGGGATCAAAGACATCCCTTAAGCGGGGACATGCAAGCCCATCTCCTGTCTCAGCTTCCCGTTCCTTCTAGGCACGATACCGTGCCCTTGGGAGGCCCTGTACTCCCTCTCCTTGTATGTGAAGGTTGGGGTGCACCTTGCTCTGCCTGGCCAAAGACTGATTAATAAGCTCCAGCCCAAGGCACCGTGCTGGCCGCCTAGCCCAGGCCCCTTATTATCTCGGGCGATTTCTCTGCGAGGCACGTAAGCCGCAGCCTATAAAAGCGAACAGCTCTTCATCTTTAAGGTTGATCTCTGAAGACTAATTCTCCTCCAGAAGTGAACTGCTCCTTCGAGGAGCTCCCATGCCACACTGGCTCCAAGGGATCTTGCAACTCCCTCCACCCTCTCCATCTCTGCCCCCTCTGTCCCCACTCCCCTGGGAAGATATGTGCCCAATCCATCAGGATGAAGTCTTGGAGATGTTGAGCCTCCCCACACACCCCCGCCCCCACCGCGAGCTGGCTGGGGGACCTTAATGCTACAAAGTCAGAGGACACAGCATGGAGATGCTCAGGGCAAGGTGTCTCCTGATGGGCCAGAAACCGGTGTAACAGCCATTTAGCTGCCAACTTAGCTTTGTCCCTGAGTCCCCAGCCTTGCTTCTCAGGGAAGGAGTGTTGGAAGACATTCAACCCATGGCCACCCAGATCCCAGTTGTCTTGAGACATTCCCCCCCACCCGTCCCCCCACCGTGTCACTTTGGGACTGGGTCTTTGCTCACTGGACCTCAGTTTCCACATCTCCAAAATGAGTCCAACCACAGCCTCCGCAGCAGGCACTGCCTGCAGGCTTCAGGGGCAGGGATGCAGCACATGGCTGAGGGATGGCGGCCAGCAGGCTCCCTGCAGCCTGCTAGGGAGCTTGGTTCAGCTTGGGGTTACCTGTGTTCTGTGTGTGCCGTCATGAATAGGCAGTAGCCCCACTTCAGAATCGAAGGCTCTGGCTCTGCCGGGAAGTCCTGAGGCTCTGTGGTGCCAGGCATCCCAGCTTGTCCCAAAGGCATGGCCTGACCCACCCACTTCCTGCCTCGTCTATCCGTCCACTTCACAGGTGAGGCCTTACCTGTGCCCAGTGGTCAGACTGGGCATGGGTTCCAGGGTTCCCCATGACTTGCCAGCTCCTGGACCCCTAGAAACTTTGTCCTCAGCCTTTGTCAGAGCCCTAAAGGGATCATGACCCCAGGGAGGCTGGGAATCAAGTCTACAGACACAAGCAACCCTGGAGCAGACACAGGCTCTGAGCCCCATCTGATGCCTCTATTGGAGTGGCCCAGAGCCTGGCTCGTGGGATGTCCTGTGAGTGGAAAGGTGATGAAATCTGTCTTGAGATGCCCATCAAGAGGGAGTCCCTCCATGCTGGGGAGTAGGGGGAGGAGAAGCAGTCAAGGAGGGCTTCCTGGAGAAGGCCAGACCTTTGCCCTCAGCCTCTGCTGCTAAGAGACTCAGGAGAGGGTATTCGGGTTTATGGAAGAAAAGCAGTTTGCTTTACTGCTTTCTCAGTAGTAAACACAATAGGTACTTTCTCTACGGCCAGGAAAGCAAGCCGGCAGTCAGCCACATCCAAAAGGTCTTGCCGTGTGTGAGAAAGGGAAGGTGTCCTCCCAGTGCGGAGGACATTCGGAAATAACGCTCTGGGTGGAAGATAAAAACCCCCTCCAGATGCTCTGCGCGCATTGATCATGAGATAATAAAAGCCACTAATATTTATTGCAGAAGTGTACCGTGCCCAGCACAGCTCCAGGGTCTTTAATGTACTAATTCAGTTAAAGACGTATCTCCAGTTAAGCAAGTTGCGGGTGCAGGGGCAGTGTGTGGGAGAGAGTTGAGATTTGATGATATAGGAGGTGCCTGTCCCCTCCTGAAAAGGGGGTAGGGAGGACACAGGTCCAATCAGAATGCTGTTTCTAATTGGCTGTGTGATTCTGGGCAGGTCCTTGCCCCCTCTGGGCTTCTGTTTTTCTTATGTATAAACGTTCAGGGGCTATGAGTGACTTGGTAGAATTAGTGGGTCCCCAAGGCATTTGTTGCTACACAGTCATGGCACCATTTAAAATTACAAGTGACACTGGCTTTGGTTTCAGTTGTTATTAAGCCCTTGGTGCACCAGCCCCATCCTTCTAGGGACAGCTCTGCCCGATTTGTCCCTTGCATCCACATTGTCTGCCTGAGGAGGCACAGTGCCTGTTTGCCTCAGCCCTTCTCCACAGTGGCCTCAGAGATCCTCTGTCTGCTGTCTGACCTTTGTCCAGTCAGGGCCCTGCTCTAGGAAGAGAGCAAGGTAGAGAGATGGCTCCACACAGGAATGAGGAGAAAGTGTGCTCTTTGTCTGTCTGTCTGTCCCTCCCCTGCTCCAACCACTGCTCTCCCTGCCTCTGTCTCTCTGACCCTGGGCTGCCTACAGCTTTCTTTGGGGTCTCTTGCCCTTCCAGCCTCCTGAGCCTCCCTGGAAACAAGCTGGCCTCTAATGGTTGCCTTCCTTTCTCTTGTCTGTCTGTCTGTCTGTCCACCTGTGTCCTGGGCTGACCTACAG
Seq C2 exon
CGAGCAAGCTGCAGTTATGTCCTGTGCACGGTGCTCCTGTCCCTTGCGGTGCTGCTGGCGGTGGCTGTCACCGGTGTGGTTCTCTTCCTGAACCACACCCACACACCAGGCACGGCGCCCCCACCCATCGTCAGCACGGGGACTGCCGGAGCCAACAGTGCCCTGGTCACTGTGGAGAGGGCTGACAGCTCCCACCTCAGCCTTCTCATCGACCCTCGCTGCCCCGACCTCACTGACAGCTTCGCCCGCCTGGAAGGCATCCAGGCCTCCATCCTTCGGGCACTGAGTGAGCACCAGGCACAGCCGAGGCTGGACGGTGCCCCCGAGCTGCTGGACGCACTGGCTGACCAGCTGCCCCGGCTGCTAACCCGGGCCTCTGAGCTGCAGGCTGAATGTGCTGGGCTGCGCAAGGGACACAGCCTGCTGGGCCAGGGCCTCAGCACCCTGCAGAGTGAACAGGGTCGCCTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026841-Fibcd1:NM_178887:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.458 A=NA C2=0.089
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF104734=CENP-F_leu_zip=PU(59.5=29.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: