GgaINT0124051 @ galGal4
Intron Retention
Gene
ENSGALG00000003866 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr17:6050314-6054936:-
Coord C1 exon
chr17:6054789-6054936
Coord A exon
chr17:6050791-6054788
Coord C2 exon
chr17:6050314-6050790
Length
3998 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
CCCTCTCTCTGTGTCCCCAGAGG
3' ss Score
11.95
Exon sequences
Seq C1 exon
CGCGGAGTGCGGGGCGCGGGGCGCGGGGAGCGCCGGGGCGGGGGCTCGGGGACTTCGGGCCGAACTTGGCGGCGCGATGGGGAACGAGCGCTGGAAAACCATGGGAGGAGCCTCGCAACTTGAGGACGGGCAGCAGGAGAAACCGCAG
Seq A exon
GTACGGGCCGGGGGGCGAGCCGAGCCGGGGGTCCCACGCGTGTCCCCCCCCCACCCCACGGTAACTTCCACCCGGGGGTGAGCGGCCCCCCCGGCACCGGGAGCATCCCTCGGGCACCGCTCCGAGCCCCCCTCCCGCTGCCTCCCGCATCCCCCGGCTCCGCGTCGATTCCCGCATCCCCCTCCGGCGCAGGGGCTGAGCGCTGGGCAGGCAGCGGGCGAACGCTCACGCCCGGCTCGGATTGACTGCCGCACATTTTAACTGCTTAAATCACCTCTTAGAGGGGATTGCGAGTCCTGGCCGCGCTCTGCAGCCTCAGCCAGCTGCCTTCCTTATCTCCTCCGCTCCCCAACCTGCCCACCTCCTGCCACGGCCAAACGCCGGCTGGGTTTCGGGCAGAGGCCGGCGTCGCGGTGGGGCAGCGGTGCGTGTGCCGGAGGCTGTTTGCAGGGCGGCTGCAAGTGTGCCATCTCCTCCAGCCGGAGCCATTGGGGTGCGGGCGGCATCCCAACGTGGATCCGCGGCGCGCAGGCGGCAGGTAGGGGAGCGTGGCTGGGGCGTGGGGCTGCCTCGCACCTGGTGGTAGGGGGGGACAGGCACGGAGCGGGGCTGAGCGGCGTGGGAACAGCGGGAGAAGGTGAAGGAGCTGATCCTGACCGAGCCTGCGAGCCGAGGGATAGAATCTCCCTTCCTTCAGCTCCGTCTCCTGGCTTCCGTCTGCACCCCGCTGCCGGGGACAGGGGATCCCCTGCAGGGACACGCTGATCCCCCTGTCCGTCGTTTCGTTTTTCCCCTTCCCCTTGATGAGGGAAGTGCACTCGGGGCTGGGCGTCGCGGCACGGAGCTGCTTGCTCCTGCACGTTGCAGAGGGAGCAGAGTTTGCTTCCAGCTCCCGGAGGCTCCAATGGAAGCCCTGTCCCCGTGTGCGCCCAGCACCGCACCGCGCTGTGCTGCGCTGTGCTGTGCCTGAGGAGCACGGGGGAGAGCAGGCAGAGGGATGCAGCTCGGCTGTGCCGTGTCCATGCCTGGGAACCGGGGCTGGGACGGGCAGGGTGCAGAGCTGGGCAGGAGAGCAGGTGGAGAGGAGCTGGAGCAGAGCTGCATCAGCCCAATGGAGAAGGGGCACAGCAGCTGGGATGCACAGTGAGCTGCTTAAGCAAGCCGTGGGATGGACTGGCCCTTGCTGTCCTCCGGCCGGGCTCCTCTGGAGCCAGATGGACCTGGTAGGAGGGGGGGATGGCTGGGCTGCAGGGAGCACAACCAGGGTCCTGCTTCGTCCCTGGCTGGGACACAGCTCATGGGGAGAGCCCTGGGGCTGCCCCATCCCATGGCATGGAGCTATCCCAGCGGCCCTGCCGGGTTACAAAGAGCAGTGCCTTTGGCTGGAGTAAAGGGCACCTCCTCCTTGAAGAGCATCCCCACGGCACGGCGCAGCCTCTCCCACCACCACTCTCCATTCTTGGCTCTGGCTCTGCTCCACCTGCCCGGGGACAAGCAGCCCTCCTCCCTCTGGCTCTGCTCTGCCTCTCCATGCTGGAGTTGCTGCTCCTGCACCCACATGGCTGCTCGTGTGCCTGGGGGCCAAGGAGGAGGGGACGTGTGGTGGGGTGATGATGGCACCCCCAGTCCCAGGGTGCACACAGCGTGTGGGCAGCTCACACCACACAGCTTGGGCCCCCTGAGTGTAAGGACAGCGAGTAGGAGCAGCATCCTTGATTCCAGCTCTGTCTCTGTGCTCTGTGTGCACGCAGAGAGCTGGGCTTGGCCTCAGCAATAGCAGCGGTTCTGCTCCCCAGCCTGGCACTGCTGCCAGCAGATGTCAGATCGGAGGCCACCGGAATTTCTGGCATCCTGCACCCAGCCAGGACCTGTGCTGGGTTTTGCACCGCTGCATCCCTCCCAGCCCCAGCACCCAGAGCAGGCTTGCAGGGAAAGCTCTGCTCGCTCCTTGGGAAGAAGCGATGTGGGGACGTGGGCCTGCTGGCAAGGAGAACAACAGGGTCTGTCAGCAGAGGGATGACCTATGGCTGCTCAAAAGCAAGAAGATCTGTGAGCTCAAACCCATGCAACGGGGAGCAGAAAGCCCCGGAGCTCCGAGGAATGCGGTGCTGGCAGGGCTCCATGCCGGGTGCTGGGCACAGTGCTGCTGAGCAGTGGGCACTGACAGACCCCAACCCCAGCTCAGAGTGCTCCAGGTGCCGCCGGAGGAGTTTCCCTCCTCTCCCACTGCAGGTTGCCAGGTAACACAACCCGCCAGCACAGCACTGGGGGACGGGGAAGGCTGTCACCACTCAGCATCTCTTGGCTGCAGGCAGAGGTGCATGTTGGCAGAGGGGTCGTCCCCTCACTGCTGCACCCAGCGATGGCAGGAAGGTGACAACGGCAGGGCTGGAAGGCTGGAAACCAGCAGCGTTCCCTGCTTGGATCCCAAATAACTCGACGTTCCCCTGTTCCCAGCAGCTGTCCTGACCTGCATCTGTGCTCATGGGGACCCATCTGTCCCCATAGGGCTGTCAATGATGTGCATCTCTGCTTCCTTCTCCCACTGCCCCATCCCGTGGGGAGAACTGCCCTGGGGCTGAGCCCCACGTGAAGAAACCCAGAGCAGCCCTGGGGCCGTGCGGGGCAGCTGTGCCCCCCCACCTCCCCCGGCTGCCGCAGCCGTGGTCACCTTAATGCAAATGGTTGCGGGAGCGTGAATGAAGGGTGCTTGAAGGAAGGTGTCACTCCAGATAGATGTGCACGGGAGGGGACAGGGCTTGGGAAATCTTTGCAGATGCAGCAATTTTCTCCTCATTCCTGGAGAAAGTAGTCTTTGTCTCTCCAAATAGGCGGCTTTCTGGCAGCGCTGCGATTCCCTGTGACAGCTGCACCGGGGTCAGGGGAAAATCACCGCCCGCGTCCCGCAGGTGTAATGAGAAGGGGCCGGAGCTGATGGCTGGATGGCAGCTCACACCCTCCGTGCTGATGGCTTTGCAAGAACGGGCACTCGCTGCACCCTGAGCAGCTCCTGCAGGCTGAGCCCGGGAGCGACCGCTCCTCCATTGGGTCCCAGTGGGATAGGATCACCCCGGAGCAGGGAGAAGCCCCGCTGGGAGCGACCCCCATTGCTGCTCAGAGTGGCTCCGGCCTCCTCACACCGCCGGGAACACCCCGTGCTCCCCTCTCTCCCTTTGCTTTCCCCTCCGTCCCCACTGCAGGGCACGGCGTGGGGGTTCTCCCTTTCCCTCCCTGCATTCCCACACTCCCAGGGCATTGGGGAGCCCACGTGCACCTCCTGGGGCTGGGGCTGCTCCCACCGAGCGTTATGCCTTCAATAAAACATACACGCAGCCGCACGCTGCTCTGCTCAGCCTTTTTATTATTTCATACCCGTGGCTCCCAGGCGGCTCCAGCAGCTTTGCTGGCCGAGCTCACCCATGCCTGTTGAAACTGCAGGGTTCCCTGCTGCCCCCATGTCCCCTCCTGCAGCACTACGCCAGGGTGCGGTGTGACCTCCTTCATTGCCAGAGCTGGAGCGGAGGAGCAGATCTAACCCGTGCAGAACGTTACCCCCAAAACCCTACATCCTGACCTCTCCAGTGCCCCCTGGGCACAGGGTTTGTTTTCTGGCGTAGTTCTTTGGATCTGCCTCAAATGAGGGCATGAAGACAAAGCAACCCTGCAGGTTCCACGTAGGGACTAAAGCACTTTGCTTTTGTGATGGGCAACTCTGCTTCTACCTCCCATTCCTCCGTCCTGTGGGCAGAAGTCCTTGGGGGATGAGCCTCACTTCTCCGTCCCATCACCATGGCTGATCCCAGCCTCCATGAGGGTCCGAACCCACCCCGTGGTGGAAGGGCACTGGGATGGGTCTGTATGGATGGTCCCATTGGCCCCTCATGGTGATGGGTCCATCTGGATGGGTCCCAATGGCACCCCGAATGGGTTCTGATGGCCCCTCGTGGTGATGGGTCCGTTTGGATGGGTCCCGACGTCCCCTCTCTCTGTGTCCCCAG
Seq C2 exon
AGGATGAGCTGTGGCTACGTGCTGTGCACCGTCCTGCTCTCGGTGGCCGTCCTCTTGGCGGTGACAGTGACAGGGGCCATCCTCTTCATGAACCACTACCACACGCCCGTCACCGAGCCGCCCCCCGTCATCAGCACCAACCCCGAGGAGGCCAACGCGTTGGTGACCATCGAGAAAGCCGACAGCTCCCGCATCAACATCTTCATCGACCCCAACTGCCCCGACCCAGCGGGCAACGTCGGGCGCCTGGAGGGGCTGCAGGGCTCCCTGCTGCGCGCCCTCGCCGAGCACGACGCTGAGGCCAAGGCCACCAAGGGCCAGCAGAAAGCTCTGCTGCTTGGTGTGGCCGACGAGGTGGCCAAGCTGGTGACGCACGCCGCGCAACTGCGAGCTGACTGCGATGGCCTCAAGAAGGGGCACAGCGCTATGGGGCAGGAGCTCAGCGCCCTGCAGAGCGAGCAGGGCAGGCTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003866:ENSGALT00000006154:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.176
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]