HsaINT1013650 @ hg38
Intron Retention
Gene
ENSG00000130720 | FIBCD1
Description
fibrinogen C domain containing 1 [Source:HGNC Symbol;Acc:HGNC:25922]
Coordinates
chr9:130929567-130938850:-
Coord C1 exon
chr9:130938536-130938850
Coord A exon
chr9:130930047-130938535
Coord C2 exon
chr9:130929567-130930046
Length
8489 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGC
5' ss Score
10.12
3' ss Seq
CGTCCCGGGCGGGCCTGCAGCGG
3' ss Score
4.14
Exon sequences
Seq C1 exon
GCGCAGCGCGAGCGGCGGGCGTTGGGCTGGCGGCTTTCGCGCTCCCGCTCCTGCTCCCGCCCGCACACAGCGGCGCGCTCATCCTCACACGCCCGCCCGCTCCCGGGCCGCCCCGGCGCGGGGCACAGAGGCGGGGACCCGGCGGACAGAGCGCGCCCCGCGCCCGCGCCCGCGCCCACCCCGTCTCCTTTGCGCTCCGCAGCGGCGCGCCTCGCCCGGCGCCCCCGCCAGTCCTGCCGGAAGATGGTCAACGACCGGTGGAAGACCATGGGCGGCGCTGCCCAACTTGAGGACCGGCCGCGCGACAAGCCGCAG
Seq A exon
GTACGCTCGGGCGCTGGGACACGGGGCCTGGGCGGCTGGCCAGGCGGTGGCCGCTCGGGCCGGCGGGGCGAGCACCCATTGCGGGGGCTGGAGTTTGGGGCGCACCCCTTCGAGGCTCCGGAGGCCCGGGCCGGGATGGGGACCCTCCTCTCCTCCTCCCCGAGCCGAGGCTTGAACTCGAGGTTCGGTGGGGGCGGCACCCCTGCAGGAGCCACGCGCGCTGCGGGCCAGGTCTCCCGCGTCCCCGCACCCCCAGCAGCCCCCTGGTGCACGCGGGTGCAGAGGGAGGCGGGGACTTACAGTTCGCTGTGTGTCCACAGACAAATCAGCCCCGTTGCTGAGTCTCCGTTTCCTCACCTCTACAATGGGCATCTTAACTACCCACAGAATCTCCACTCTGGGCGCTACCCTGTGCCAGGCACCTGGTCCTGAACCTGACCCCCTGAATCTCCTCTGCATCCTTCCCTTTAGCCAGGGCCCTGCATACAGTAGGGGATCAATAAAGATTCATCTCCTGCAGGAACGCTGGGTATTGTGATTTTCTGACTTTAAGACAAGGAAAGCAGGGCTCAGAGATGGTTGGCTCCTGCCTGAGGCCACGCAGCTCTGTCGGGATTTGAACCCTTGTCTGTGTGCTCCAGGGCTGACTCATTCCTCCCTTCCTGCTGCCTCTTCAGGGGCAGTGGAGGTGGGGCTTGGAGGGTGCCCAGGGCTGTGCGGTGGAAGCGGGTGAGGGCAGAACACCTGGGCTGGCCAGCAAGGGGGCTGGAGTCCCGAAGCCAAGGCGGAGGGGAGCCCCAGGGCTGCCCCAGGCTGGGCTGCCAAGGGACTGGGGCAGGCAGGCGAAAACGAGGAGGCCGCTCGCTCACCAAGGAGAGGAGAGAATAGGGCTGCCCATTTTAAATTTTAAATTTCTTCCAGACAGATGTCATTGGGGAAGGAACAGTTCGTGCTTGCAGCTGCAGGAGGGGGCGGCACGGGCAGCCCTTGGTGGTCCCTTCCTCTCAGGAGCTGCAACCTGCTCATTCTTCCTGGTGTGACACTGCCGTGGCACAAGGGCCCAGCCCTCTGCGGTTTGCAAAGCCCCTTCCCATTCATCGGCACTACCTCACTTCTCCAAACAGGCTGGGGGCCAGTGCGTTCCCACATCACAGACCAGGGATCAGAGAGGTTCGGAACATGCCCAAGTCACACAGCACGTTGGCAAGAGAGTGGGGATTCAAACTCTGGTCTAACCACACACCTATCCCACTGCTTCTCCGGGGTGGTCGCGCCCCTCTTTTAGGTCAGGTCTGCACCTAAGCCACCCCAAAATAACAAGTCCCCTCCTGCTGAGATCTGACTTCTCCCCCTTAGCAAGAACTGTCTTAACTTCTAGACCTGTCCTCCAAGGCCATCCCTAACCTGGCATACTGTGCCTTCCCATTGGTCCCTTACAGGCAGTGACTGTTTGTTATTTGCCAACCCTGGGCCCCACACCACGCCGCTCCATTTCCAGATCTTTTCTGTGTCATCTTGTTTGCTTCCCCAGCCTTACACAAACACACACACACACACACACACCCCTTCACTCAGGGACACCCTACATATACTCAAAATCAAGCTCAAATGCTGCCACCTCCTCCAGGAAGACTTCCTGATGCCCTGTGGCTATGTCTCTAAGTTCTAGTAGTGTTTAGCCTGTGCCACTCAGCTGCCTTGTCCTGGGCCCCTCCTGCATCAGGAGATCCCTTTGGACACACCCTCCTCTGGAGCCCATCTCTGCATCTCTCCCTGGGCCCAAGCTCCATTCTTTCCAGGCAGCTCAGGTCAGGCATTGAGAGCGTTTGCTGAATGGCACTGCATGACGCTTCGGCCAGGAAGAGCCTCAGGAGACGGCCAGCAGGCACTGGTCTGTCTCAAGGGGAGGTGCCTTCTGGGGAATGTGTTTGAAATGTGGCTTCAAGGCCTCCAGGCCGGGCCCCGCCTTCCTCTGCTGCTCCCTGGGGGCACAGCTTTCAGCCCCCACACAGCCCAGCTGTCTGCCCCTTGGCATTGGAGGAAGCTCGAGGGCTGTTGCTCCAAGAGCCTGGGCCAATAGCAAGCACCCGCTTCCCCTCCCCGCCCGTTTGGTGACCCAGCATGTAGACAGGCTGTTCCCTGTGCCAGCTCTGGGCTTGTTTGAAGCTTCAGACAAGAGGCAAGGCCTTTCCTGTGGCCACTGTCAGAAGAAAGAGAGAACACTGCTTGCCCTGGTTCCCTTGGGCCTGCCCTCTCCTGGGCCAGCCTTCTCTCCTCCCTTGTGGCCAGGTTTGTCTCACCCACTGACATGCTGTGTGGCCCTGGGTAAGTTACTCCTCCTCTCTGGGCCTGGGCTTCACCATCTGTAAAGTGGGAACAGCAATCTTCGCTTCCTCCTCATTTCACAAGGGCTGTTATGGGGGCCACGTGACATACTGGTGTGTTTTGCAAACTGCAAAGCACTGTGTACTCATGAGGAGGATGCCTCTCGCAGCAGCCTGTCCCTTCCACAGGCTGGCTGTGTCCCGGTCTCCTCTCTGCCCCCCAGGAAACGCCATCTGAACATCTGGTTCCTACAAACGGGGCCTGGCCGAGGTTCTTTAACGGGGATTTTCCTCTGGGAGCATAACGCTGACGCCGCACTCCAAGCACCAGTAGGTCACAGGCCACGACTAAGATTCATTTCTTAGTCACAGCCACCCTAGGAGCTTGGTGGCAGGAGTGATGAACCCATTTGACAGATGAGGAAACTGAGACTAAGAGCTGGAGCTGGGACTCAAACCTGGGTCTTCTTGGACAGCAGACAAGTGCCTAAGGGGTGGCTGGCCGCCCTTTCTTGGTTCAGCCCACTCAGCCCCAGTTGGGACTGCAGTGTCCAGGCTGTGTGGTTCTCAGGGTACCGAAATCACCCGCTGTGAGTGGGTATAGCCCAGGTCCGGAGGTCCTGAAGGACCTTTGTCCAAGTGCAGCCATTTCTGGGAAACGCCTTGGGCCCCATCTGTCCCAGCCCTATCCAGCCTCAGCTACTCTTTGTCGGGCGACCTTGGACAAGTTGCCGATTTGGACTTTGTTAATGCGTCCTCCCTCTCCCTACAGAAGGAGGAGCCTCTCACGCCCTTGGGGCAGGGTGAAACGGTATTTGCCAGGAGTTTGGAGTTTGTCAGATGAAAGGATCTAGAAATAGACATGATTCTTCTGGTCTTGGAGCTTGGGGCAGGAAGTCACTCTGCAACCGTTTCCTCTGGTCAGAGGGGCTTGTTTCTGAGCTGTCTCCAAGCCACCCTACAGGGAGGTCAACTTCCAACCCATCCCAGGCAAGATCTCTTGACGCTTTCAAAATTTCTAAGAACATTTCAGAAAGGAAGAAAGAAAATCTCTTTGGGAAGTTCTTCCTGATGTCTAACCTAAATCCCTGCTGCATTAAATTTACTCAGTGACTATTTAGGGAGGCCCTACCTAATGCTAGGAGGTATAGTCTGGTGGATACAGTCTGTGCCTCAGGGAGCTTAGAGTCTCACGGGGGGAACAAACTCACAGGTCGGGGCGATTGCAAACCATCATGGGTTCTGGAAGATCCATGCCTCTTTCTTCTTGTTCCCTGGGGTTTGGGTTGAGGTCACTGTGCTAGGCTTGGGGTTTCCCAAGCCCCTCCTTCTGAGCTCACTGTTTAGCTGGGGAGTGGTGTGGCTGAGGAGGTAGAATGGACAGGAGCAGGTGACTATCCAGATGTTGGGTGAGGGAGGGAGACCTGAGGAGGTGCCAGCTTTGTGGGGGCAACAGGTAGGGTTGGTGCCATCCCCGAGTGAAAAATAGGAGGGCTCAGGTTTGGGGTGGAGAGACGCTGGTTTGGGCCTCAGTGGGCTTGAGGCCCCAGTGGGCCCTCTGGGAGGCCAGAGCTGTATGTCGCGGGGAGGGTGGGCAAGACCCTTATAGGAAACATCTGGAGAAGCCCCCTCCGTGGTTCAGAGCAAATGCTCCCAGGAAGTGAGACAGCTGGGGGGCTTGGAACCTCCCGGAGGGGCAGAGGCTGGGAGCTCTGTGGGGCGCTCTTGTCCCCTTGGACACCTTCAGCCCCTCCTGCGCCCCTCCCTGTGGCCTGAGACGCCAGATGGCCCTCGGCAGGGTTCTGCTGAAGGGTCCCCAGCGGTATGGCGGTTCCCGCTCAGATCTCACAGAACAAGCCTGCAGACCCCCTTCCTAAGTCTTTGGGACCCCAGAATGGTGAGCAGAGCCACCAACCCTTCACCCCCAGGGGAGTCTCTGGGACCCTCCCTCTGCCAGGGCCAGGGCTCAGAGTTCAGCCCTTACTGGGAGCCATGTGCCCAGCCATGTGCCAGCCGGGAGCAGAGTGGGCTCCTGGGGAGACAGGAGGAATTCCCCTGAGGCTCTGGCCTGAGGCAGGGCCCAGTCCCCTCAACCCACAGAGCCCATAAGCCCCCTGCCCAGGCTCTGTGCAAGCCTCTGCTGGATCCAGAGCCCACAGGACCCCGCCACCTTCAGCTTTCCATTTCCCAGTGCAAAGCCCCAGGATGTGTTTTTGTCATGCAGAACAGCTGCCTGCGTTGGGCTGGGTGCTCTTAGGAGATGGGGGTGGGCGGCAGGAGGGGCACTCACCTGGGTCTAACCTGGCCTGGCCTCCCCCGGAGGGAAACTTTCTTCTTCCTCCTTTCATCTGTGGAGTGTGGTCCCAGTCTCCCCAGGGGACTCCTGCCAGCCAGCTCTCTTAGGAAGTGAGGAGGAAGGGAGGTGTGCCAGCTTAGCAGAGCGCCTTGGCATCAAATCCCTTCCTCCTGAGCCGCCCCCCCCCCACCCGCCCGCCGCTTCCCCAGAACCCCCAAGGCTGGGGTCTCAGAGAAGGTAGCCTGGACAGAGGTCACCCTGTAACTGAGACACCACCGGGGGCTGCCTGCCGCCCTGCTGGCATGAGCTTTATCCTCCTTTTGGCCAAGGCTTCGTAGGCAGCCGTGAACCCTGGGTGGGCACTGGGGGTCACTCGAGGAACCAAGCTGGGTCCCTCCAGCTGGAAGCTCATGCGAGTGGTCAGTGGCAGAAGTGGGCTTTGAACCCAGGGCTCCCGGCTCAGGCCCCGGTCTCTCTCCTGCTCACTTGCCCGAGATGCCCTGTCTTGGGAGCTGGGGGCTCTGTGTGCATCCTCCCCATTCCGCAGCCCCCAGGGAGTGCACCCAGCTCAGCCACACCAGGACGGATGAATCAGCTCCAGCCTCAGGCATACCAGTTGGGCTGCTCAGCGCCCAGAGCCCCCCTTGTTATCTCGGGCAGATTTCTTCGCAAGGCACGTAAACGGCAGCCCATAAAAGCGAACAGTACTTCATCTTTAAGGTGATCTCTGAAGACTAATTCTCCTCTGCTGAGTGCCCTGTTTCATCTCCAAGCTCCGCTGTCCCCCTGCCTCTAGGGGACCCCCTGCGGCTTCCTCGAGCCCCTCCCCATTTCGGTGCCCTCTGCCTTCCCACCAGGGAGGGGCTTGGGTGGGAGGAGGGTGCAAGATAGGGCAGGGGTGTGGGAGTTGCAGAGGGGAGACGGATGACCTCTCTGCCACGCCAGCCCCAGCCTCGCCCGCCAGGGGACCTTAATGCTACACAGTCTGATGATGCAGCCCTGAGCTGCTCGGGGCAAGGTGTCTCCCGACGGGCTCCAGAAGAGTGCATGACAGGGACTTGGCTGCTGACACAGAGCTTTGTATATCAAACCCAGCCATACTTTAGGCAGGGAAGGAAATCATAGAACGGCCCAGTTAGCGGCCCTGGCACAGAGGCAGTTGAATGAATGAGTGAGTAAAAGAAGTCAAAGGCCACAACAATCTGTCTTGTAAGCACCCTAACGGGGGGAGCACAGAGGAGGAGCCCCTCCAAGCTGGGGGGAGTGGAGTAGAAACAGTCAAGGAAGGCTTCCTGGAGGAAGTGACAGCTAGCTGAGCCCTGAAAGAAGAGAATACATTAGGCCAGTGGAAAAGGAGGAGGGGAAGCAGATGCTTCTGGCTGGCCAAGGGAGCAGTTTGTGCAGAGCTGGTGGAGGGGAACTGTGCATTTGGGTCTGGCTGGAGTAAATTGTCTTGATGCGTGGAGCCCGGAATGGACGCGGCCCCCAAGAGAACTGGGCAGGCGTGGAGCACTGAGTCCTGGCAGCCGCATGACAATAGGGACAGGCCAAGAAACTCTCTTCCGCATCCTGACAACAAAGCAGATCTCTTTCCCGGGGGTCTGCATGTCCAGGCGCATGTCCCCTCCACCCCGTCCTCTTCGGGTGCCAAGTAGGTCATCCGGCAGGTCCTTGTGGAATTTGAATTTACAAAAATGATTCTTTCCTCTGCCTCATCTTCTAGGTAGTAAGACACAATGATGTAAGAGGCATCTGTCTCTGTTCAATGTATCACTAAGAAAGCAAGCAAGCTGTCAATTACGATTGTAAGATGTCCCCCCATGTTGGAGATGCTAAAACGTGAAAAAAAGAGAACATGCGTCCCAGCATTGACGACACACAGAAATAACACTTTGGGTGGAAAAAAATGTCCTCCAGATGCTGTGTGCACATTGATCATGGGATAATGAAAGCCACTAATATTTACTGTGCCAGCACAACGTGCCAGGCACGGCTCCAAGTGCTTTAATATACGAAGTCATTTCAAGACAAGTCTCAAATTCGGAAAGTTGAAAAGGTGGGGAAAATGTGTCTGAGAGTTGAGGAAATTCAATCATAGGAGGGGCCTGGCCCAGAGAGGAAGGCAGGAGGCTCGGGGCCTAATCCCAGTTCTGCTTTTATTTGCAGTGTGATTCTGGGAGAGCCCCTTGCCCTCTCTGGGCCTCAGTTTTCCCTTGTGTGTAATGCTCAGGGGCCATGAGCGAGTCTGCCCAGTGAATCTGGGCCTCCGAGAGCGTGTGCGGCCACGCTCTGGCACCTCCGCTCACCACAAGCTGTTCCTTGGTCCTGGCTTCTGGCCAACACAGTTTTTTATCGCGCCTGCCCTTCGTTTCCGTTTTTGTTTTTTGTTTTTTGTTTTTTGTTTTTTTGAGACGGAGTCTAGCTCTGTCTCCAGGCTAGAGTTCAGTGTCATGGTCTTGGCTCACTGTAACCTCCACCTCCCAAGTTCAAGGAATTCTCGTGCCTCAGCCTCCCGAGTAGCTGGGATTTACAGGCATGTGCCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCTTGTTGGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCTGCCCGCCTCGGCCTCCCAAGTGCTGGGCTTACAGGCGTGAGCTACCTCGCCGGGTCCCGTTCCTGGTTTTGAGATATGGCTTGTTCTGGAGTGACAGCCACCTGTTGCCTCAGCCCCCCTCCTCCTTGGAGGGCAGCAGGCCTCTTCTCCAGGGTGGCCTTAGGGCTACCTGGCCCAGCGGGTTGGCATTTGCTCTGCCAGGGGCCTGCTCTGTGAAGAGATAGAGGAAGGAGAGAGGATGGGGTGGGGTGCGGGGAGGAGGTGCCTAGGAGCCCCCATGTGCCCTGGGGACTGGAGAACAGCAGGACAGAACACGGGATGTGGCTGCTGCAGTTGGAAGGGACCTTCCGTGATGGGTGCCCGCTACCCCAGGGCACTCGTTCCCAGAGACAGCACGAGACCATCTATAGCATCGCTGCTGTTGCATCACAGCTCTCTCTGACCAGTGTATAGAGAGGTGGGTGTCTCTATATTGCTCTGTTTTACAGGCGAGGAAACTGAGGCTCAGAGAGGTGAGGCCCCTGGCCCAAGGTCACACTGTGGGAAATGCAGCTTAGAGGCCTGAGCCCTGTCCCGTCTGGCTGCAGAGGTGGGATCTCCACCTCCAGCCCTTACTGGGTGGTGTGGGCTCCACGGGGGCCACACGGCCACACACACAGGTGACCGTGGGTCCCTGGGCTGTCACTGTGCAGGGCATGGGGGGAGGTGGGTGGCAGGGGCAGCGAGAGGGAAGGCTTGGCATTCTGCTTGTGTCTTTGTGTCTTTCTGCCTCAGTTTCTATTTCCCATCCTGTCCGTCTCCATCTCCCTGCATCTCCCCGCGTCTCCCTGCGTCTCCCCGCATCTCCCCATGTCTCCCCGTGTCTCCCCGCGTCTCCCCGCATCTCCCCATGTCTCCCCGCATCTCCCTGCGTCTCCCTGTGTCTCCCTGCATCTCCCTGCGTCTCCCCGCGTCTCCCCGTCTCTCCCTATGTCTCCACCTCCCCTCTGGGGCTCTGTCTCTCTCCACTTTCTCCCTGAGGCGCTCACTGTGTCCCTCTCACTGCATCTGTGGCTGTCCCTGTCTCTCTGTCTCCCCTTGGACTGTCTCTCAGTGCCTGTCTCATCTCAGTCTCTGTGCCACGCCCTTGCCCAGCCCCCCAAGAAGGGGGTCCTCTGACCCCAGGTATGCCTCTAATGCTGGCCCCTTCTCTCTCCCGTCTGTCTGTCTGTGTCTGTGCGTCCCGGGCGGGCCTGCAG
Seq C2 exon
CGGCCGAGCTGCGGCTACGTGCTGTGCACCGTGCTGCTGGCCCTGGCTGTGCTGCTGGCTGTAGCTGTCACCGGTGCCGTGCTCTTCCTGAACCACGCCCACGCGCCGGGCACGGCGCCCCCACCTGTCGTCAGCACTGGGGCTGCCAGCGCCAACAGCGCCCTGGTCACTGTGGAAAGGGCGGACAGCTCGCACCTCAGCATCCTCATTGACCCGCGCTGCCCCGACCTCACCGACAGCTTCGCACGCCTGGAGAGCGCCCAGGCCTCGGTGCTGCAGGCGCTGACAGAGCACCAGGCCCAGCCACGGCTGGTGGGCGACCAGGAGCAGGAGCTGCTGGACACGCTGGCCGACCAGCTGCCCCGGCTGCTGGCCCGAGCCTCAGAGCTGCAGACGGAGTGCATGGGGCTGCGGAAGGGGCATGGCACGCTGGGCCAGGGCCTCAGCGCCCTGCAGAGTGAGCAGGGCCGCCTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130720:ENST00000372338:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.542 A=NA C2=0.193
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains