BtaINT0063154 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004196 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr19:45515666-45516552:+
Coord C1 exon
chr19:45515666-45515868
Coord A exon
chr19:45515869-45516317
Coord C2 exon
chr19:45516318-45516552
Length
449 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
GCTGGCCCCTCCCCTCACAGGTA
3' ss Score
11.11
Exon sequences
Seq C1 exon
GAGCTGGACATGAGTGACTTCGAGGAGCAGTTCAAGACTAAGTCCCAAGGTCCCAGCGTAGACCTTAGTGCTCTCAAGAGTAAGGCAGCCCAGAAGGCCCCCAGCAAAGCCACGCTCATCGAGGCCAACCGGGCCAAGAACCTGGCCATCACTCTGCGCAAGGGCAACCTGGGGGCAGATCGCATCTGCCAGGCCATCGAGAC
Seq A exon
GTGAGTGCCTCTGCCCTGGGCTTGTGGGCAGCCCAGCCCCTCGCTAGGACGGGGTTGTTGGGCAGATCCTAGTAAAAGAGTCCAGCTATGGGACAGTATCTATCAAGTTTCATACCAACGCTGGTCAGAGGGTAGAGGAGGAAACTGTGTTCCCAATTTCAGGTTAAGAAAACTGAGGTCATGCTGTGATTCCATGCCCAGGTGGAGATGTTCCTTTTGTCTTCTTGCTTCCTTGCACTCAGGCTCAGGCGTTTACAGCTTGGGTATCTCACTGATATATGTCTGGGATTCTAGGCTTCCTAGCTTCCAACTTCCTCTGACTCTCTTATTCTCTTAAGCTGTTGGTAACAGCAAATACTTAAGTTCATTTATTTGATCAAGTGATGGGGTAGGGGTAGTCCTCTCAAGAACTGGTGGGTGTGGAGTGATGCTGGCCCCTCCCCTCACAG
Seq C2 exon
GTATGACCTGCAGACCCTTGGCCTGGACTTCTTGGAGCTGCTGACCCGCTTCCTGCCCACAGAGTATGAGCGCAGCCTCATCACTCGTTTCGAGCGGGAGCAGCGACCGATAGAGGAGCTGTCAGAGGAGGACCGCTTCATGCTGCGCTTCAGCCGCATCCCCCGCCTGCCAGAGCGCATGAACACACTCACCTTCCTGGGCAACTTCCCAGACACTGCCCAGATGCTCATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004196:ENSBTAT00000034825:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.456 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(18.3=100)
A:
NA
C2:
PF0218118=FH2=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCAGCGTAGACCTTAGT
R:
TGAGTGTGTTCATGCGCTCTG
Band lengths:
346-795
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development