HsaINT0065104 @ hg38
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr17:45243118-45244025:+
Coord C1 exon
chr17:45243118-45243320
Coord A exon
chr17:45243321-45243790
Coord C2 exon
chr17:45243791-45244025
Length
470 bp
Sequences
Splice sites
5' ss Seq
GGCGTGAGT
5' ss Score
7
3' ss Seq
CCCTCTCCTCCCTCTCACAGGTA
3' ss Score
13.55
Exon sequences
Seq C1 exon
GAGCTAGACATGAGTGATTTTGAGGAACAGTTCAAGACCAAGTCCCAAGGCCCCAGCCTGGACCTCAGCGCTCTCAAGAGTAAGGCAGCCCAGAAGGCCCCCAGCAAGGCGACACTCATTGAGGCCAACCGGGCCAAGAACTTGGCCATCACCCTGCGGAAGGGCAACCTGGGGGCCGAGCGCATCTGCCAAGCCATTGAGGC
Seq A exon
GTGAGTGTCCCTGTCCTGGGTTTGTGGGCAGTCCGGCCCCTTTGCTAGGCTGGGGTTGTCAGGCAGATCCTAGTAAAAGAGCCTCAATGGTGAGCTCTTTCATCAGGCTTCATACCAACCCTGGTCCAGGAAACTTGTCCCCATTTTAAGGTGGAGAAAACTCAGTCCATGCCTAAATTAGGATGTCCCACTTCCTCCCTGCCTCTTTGCCTAGCTGTGAGCACCCAGGCTGTGGGATTTACAGCCGGGCGTCCGCCGCTGACGTACGATGGGGACCCTGGCTGCCCAGTTCCCAGTTTCTCTGGATTCCCAGTTCCCAGTTTCTCTGGATTCCTACCTCTTGCTCTCTGAAGCTGTTGGCAAATAGAAAATACTGAAATTCATTTATTCAATCAAGGCAGGGGTAGCCCTGCTCCCAGGGACTGGTGGGTATGGATGATGCCCAATCTCCCCTCTCCTCCCTCTCACAG
Seq C2 exon
GTACGACCTGCAGGCTCTGGGCCTGGACTTCCTGGAGCTGCTGATGCGCTTCCTGCCCACAGAGTATGAGCGCAGCCTCATCACCCGCTTTGAGCGGGAGCAGCGGCCAATGGAGGAGCTGTCAGAGGAGGACCGCTTCATGCTATGCTTCAGCCGCATCCCGCGCCTGCCGGAGCGCATGACCACACTCACCTTCCTGGGCAACTTCCCGGACACAGCCCAGCTGCTCATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922:ENST00000331495:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.365 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0218118=FH2=PU(20.4=98.5)
A:
NA
C2:
PF0218118=FH2=FE(23.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTCTCAAGAGTAAGGCAGC
R:
GAAGTTGCCCAGGAAGGTGAG
Band lengths:
343-813
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development