MmuINT0065085 @ mm10
Intron Retention
Gene
ENSMUSG00000055805 | Fmnl1
Description
formin-like 1 [Source:MGI Symbol;Acc:MGI:1888994]
Coordinates
chr11:103194626-103195493:+
Coord C1 exon
chr11:103194626-103194828
Coord A exon
chr11:103194829-103195258
Coord C2 exon
chr11:103195259-103195493
Length
430 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
TCTCCTGTTCCCTCATGCAGGTA
3' ss Score
11.94
Exon sequences
Seq C1 exon
GAGCTAGACATGAATGACTTTGAGGAACACTTTAAGACCAAATCCCAAGGTCCCTGCCTGGATATCAGCGCTCTGAAGGGGAAGGCCTCCCAGAAGGCCCCCACTAAGACAATACTCATTGAAGCCAACCGGGCCAAGAATTTGGCTATCACCCTGCGCAAGGGCAACCTAGGAGCAGACAGAATCTGCCAGGCCATCGAGAC
Seq A exon
GTGAGTACCTGTGCTGGCTGGGGTGTGGCCCAGTCCCCTCACTAGGCTAGGCAAGAGCATAGTAAGAACCCCAGAAGTGGGACAGAACCCACCAAACCTGTCCCAGCAGGTCATGACCTGGTCAGGGAGCATTGTCTCAGTTTGAGACCAAGAAAACTGAGACTGTACTTTGAGTCTAAACCCCGATTGAGACCTCCTGACTCTCTTCCTGCTTCTGTCCAGCACGGGCACCCAAGCCAAAGGATTCATAGCTGTCTATCTGCCAGTGTTGTATGACAGGACTTAGGCTTCTGGTGTCCCGGACTCCTACCTCTTGTTCTCTGAGGCTGTGTACACAGACTAAATATTGATGGTTGTTTATTTTATTCAGTCCCGCTCTCTGGAACTTGTAGGTGTGGAATGACACTCGCTCTCCTGTTCCCTCATGCAG
Seq C2 exon
GTATGACCTACAGACTCTCAGCTTGGATTTCTTGGAGCTGTTGACCCGCTTCCTGCCCACGGACTACGAGCGTAGCCTCATAGCCCGATTCGAGAAGGAACAGCGGCCGATGGAAGAGCTGTCAGAGGAGGACCGCTTCATGCTTCGCTTCAGTCGCATCCAGAGACTTCCGGAGCGCATGAACACACTCACCTTCCTGGGCAACTTTCCAGACACGGCCCAGCTGCTCATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055805:ENSMUST00000042286:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(18.3=100)
A:
NA
C2:
PF0218118=FH2=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCCCTGCCTGGATATCAG
R:
CCCAGGAAGGTGAGTGTGTTC
Band lengths:
357-787
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types