GgaINT0047758 @ galGal3
Intron Retention
Gene
ENSGALG00000012525 | FMNL2
Description
NA
Coordinates
chr7:37164449-37165743:+
Coord C1 exon
chr7:37164449-37164651
Coord A exon
chr7:37164652-37165508
Coord C2 exon
chr7:37165509-37165743
Length
857 bp
Sequences
Splice sites
5' ss Seq
CGTGTAAGT
5' ss Score
8.58
3' ss Seq
CCTCTTGTCCTTTCACATAGGTT
3' ss Score
10.07
Exon sequences
Seq C1 exon
GATTTAAATGTGGATGAATTTGAAGAAATATTCAAAACAAAAGCCCAAGGTCCAGCCATTGATCTTACATCAAGCAAGCAAAAAATAACTCAGAAAGGGTCGAACAAAGTCACGTTACTGGATGCAAACAGAGCCAAAAATCTTGCCATCACTTTAAGGAAAGCTGGAAAGACGGCGGATGAAATATGCAAAGCTATTCACGT
Seq A exon
GTAAGTAAAACACTTGTCAGCAAAGAAATCATATTTGAGATTTACTGTGGTTTTTGGTAAGTGGAATGACTTTGAATTGGCAGTTGATGTAAATGTTTTTGCATCTGGAAAAAATCCATCAGTAAGGATGGAACCAATCTGAATTCCCACAAATCGGATTCCCTTGTACTACAGTATGTTAACTTGCAGTTTTGTGTCGCTCTATCACTGTATGGCCTCAACAAATTAACACATATTTCATTAAAGAAGCTAATTCATGTTCACCCACAGTATGCCATTGCATACTGAATTTCTCATTTGATGTACGTGGTATTTTATGTTCTAATGGACACTCCAAAGGCGGAGTATCAGGAAGAGGCAACCCTTGCAGCTTGCTCCACAAAGCACAAGTTGAGTCCAAGTACACTGGAAGCATTTTGCATGCAGTGAGGTTTATGTAATCTCCCCACACTGTGCCAAACCCAAATGTGATACAGGTGTGTCAGAGCATAACTGCAGCATAGGGTTCTGCCATGCCCCATCCTGTAGGGTACAGACCCGGCCTCCCAGCTCCAGCCCTCCAGCTGTGCCTGCTCCTTCTTTGAAAACAGAATCAAGGTGCCAAGCAGCATTCACATCAGCACTTGCTTTCTGTGCAGAGACAGCACAGACACGTGTTAACATCTTTATGTACATACAGCTTCATGGGCAGGATTGTGCCCATGGCTCTGGGACACCCCCAGGGATGGTGCCCCCCCCACTCCCTGGGCAGCTGTGTCACTGTCTGACTGCTCTTTGGAGAAGGAATCGTTCCTGTTATCCAGCCTTAGCCTCCCCTGGCACAACATGAGGCCATCACCTCTTGTCCTTTCACATAG
Seq C2 exon
GTTTGACCTGAAAACGCTGCCTGTGGATTTTGTTGAGTGCCTCATGAGGTTCCTGCCCACCGAGAACGAGGTGAAGGTGCTGCGGCTCTACGAGCGGGAGAGGAAACCCATTGAGAACCTGTCTGATGAAGACCGGTTCATGATGCAGTTCAGCAAGATCGAGAGGCTGATGCAGAAGATGACCATTATGGCATTCATAGGCAACTTTGCTGAGAGCATCCAGATGCTGACCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525:ENSGALT00000020460:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(18.3=100)
A:
NA
C2:
PF0218118=FH2=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGGTCCAGCCATTGATC
R:
TGGTCATCTTCTGCATCAGCC
Band lengths:
345-1202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]