DreINT0069072 @ danRer10
Intron Retention
Gene
ENSDARG00000012586 | fmnl2a
Description
formin-like 2a [Source:ZFIN;Acc:ZDB-GENE-081105-70]
Coordinates
chr9:4786326-4787355:-
Coord C1 exon
chr9:4787153-4787355
Coord A exon
chr9:4786561-4787152
Coord C2 exon
chr9:4786326-4786560
Length
592 bp
Sequences
Splice sites
5' ss Seq
ATTGTAATT
5' ss Score
-0.94
3' ss Seq
TGTGTGTATGTGTGTTTAAGATT
3' ss Score
7.69
Exon sequences
Seq C1 exon
GATCTGAATGTGGATGAGTTTGAGGAGATGTTCAAGACAAAAGCACAAGGTCCAGCCATAGACATCACCTCCAGCAAACAGAAGACCGCTCAGAAAGGACCACATAAAATCTCGCTGCTGGACGCCAACAGATCGAAAAACCTGGCCATCACCCTTAGGAAAGTGGGCAAGACATCAGAGGAGATCTGCAGAGGCATTCAATT
Seq A exon
GTAATTCACAGCTGACACACTATAGATATTTCACTGTCACCAATACCTCTTTAAAGGAATTTACAAGTCCCCTAGAGTTCAAAAGTTGAGTTTTACCATACGTTTTCAATCCATTCAGCCGATCTTCGGGTCCGACGGAAGTTCTTTTAGCTTAGCTTAGCATAAATTATTGAATCGGATTAGACTATTAGCATCTCATTCAAACATGTAAAAAAAAAAAGTTTTGTCTTAGTACATGATGGAACTACAAAAGAGTTTAAATTGAAAAATGATTGAAACTCTTTTAAAGAAATGTTTGTGCAAGATGCTAATGGTCTAATCCGATTCAAGGATTTATGCTAAGCTAATCTAAGGTAAAAGTGCTCCTGTCAGACTGAATGGATTCAAAAGAGGTTAAACTCAAATGTCTATCTCTAGGGGAAATGTAAAATGAGCCGATTTACTGAGAAAAGGGGAGTGATCATTTAATAAATTATTTTATTAGAGCTAATCATGAACTTTTTTGTTGTACTCCAAACTGAACTGACAATCGAATGTGATTATATTAATGCTCTGACGTGTGTGTGTGTGTGTGTGTGTATGTGTGTTTAAG
Seq C2 exon
ATTTGACTTGAGGACATTGCCGGTGGATTTCGTGGAGTGTTTGATGAGATTCATTCCATCGGAAGCGGAGCTGAAAGTTTTGCGGCAGTACGAAAAGGAGCGCAAGCCTCTGGAAAACCTGACAGACGAGGATCGCTTCATGATCCAGTTCAGCAAGATAGAGCGCCTCATGCAGAAGATGACCATTATGGCATTTGTGGGGAACTTTACAGAGAGCATTCAGATGCTCACGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012586:ENSDART00000016814:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.237 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(18.3=100)
A:
NA
C2:
PF0218118=FH2=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAAGGTCCAGCCATAGAC
R:
TGGTCATCTTCTGCATGAGGC
Band lengths:
346-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]