BtaINT0063186 @ bosTau6
Intron Retention
Gene
ENSBTAG00000026851 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:43667156-43668876:-
Coord C1 exon
chr2:43668674-43668876
Coord A exon
chr2:43667391-43668673
Coord C2 exon
chr2:43667156-43667390
Length
1283 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
ATGTCCACTTCTGTCTTCAGATT
3' ss Score
9.78
Exon sequences
Seq C1 exon
GATTTAAATGTGGATGAATTTGAGGAAATATTTAAGACAAAAGCCCAAGGTCCTGCCATTGATCTTTCTTCAAGCAAACAGAAGATAACACAGAAAGGATCGAATAAAGTGACATTACTAGAAGCAAATAGGGCTAAAAATCTTGCCATCACTTTAAGGAAAGCTGGAAAGACTGCTGAAGAGATATGTAAAGCTATTCATGT
Seq A exon
GTAAGTTCAGGGCATTCAGGAGGATTATATCCTAGTAAATTTAGGATAAAATGATGGACCAGAAATGGCCCATGGGGGTGCCGTATTAGAATGAGTAGTTGTCTTATAAGAACAACAATTGGATCGTGACATCATTTATTATCTTGGTCTGCTCTCTTATATATGCCGACAGCAACACTTACATAAAAGGAAAGTTGAGGGAAGTATTGCAGATGATAAGAAAAGGGAGAAAATGTCACTTTCTGTGGAGTATCTGAATTTTATCCAGATTTGCTGAGTATAAATTTGATGGCATTTGTGGAATGATTCAACTCAATGCCAGATGCAAATAGGATACAGATGCATATTTTAATTCATAACAATAGGAATGTGATTCCTGTTGCTGCTTAGCACTTTCCGACCATTTTAAACCAAGTTTAGTTCTTTTTTTCTTTTTTTAAATCCGTGAACTGCAGAGATGGCATTGGTTTTATTTACTCTTCTGTGAGAAGAATCTTTCTACTCTTTCACTTGTGGTAACTTTCAAATATAATAAGGATGTTATTAGATGTTTTAGGAACTAATTTGTCATTGATGTTCTGTAAATTTTGATCAGAGATTCTGTTTTGATTTCTGGTGCTGAAAGCTAATATGCATTATGGTTTTTAATCTATATTTATTTTGCTTGTCATGATTAAATGTAATTCTGTTGTTTTGCTGAACAGAGTTTGTCCAGAGAATAAAACAGAGGTTGTAGCACATACTTCTTTAGTTCACATTGAGCATATGTCCACAAAGAGCTGGTATTCTTTAAACGGATGTAAGCATTTAAGCAAAACATCCATTTATTATAGGCATTTGGATGCATTTTTCCTAAACACAAGGAAAAATATCCCAGACTTGCTGATCTAATTGAAATCGTTTACAGAGTTCATCAGATATTCTGTAATCGTGCGTATAATTTGTATCTCTTTAATTAGTAGGATTTCACATGCCTAAAAAAGGTCCTTGAACCACTTAACCACCAGACGTTCAGCCTTCCTTCTGCTTTTTCCTACTGCCATTTATTGCTGGTTTCCAGAGGCTTGGGCTACTGATAGCCTGAAAACTGAGTGTGGCGGTCGTGGTCCAGGTTTCCAGGAAGGACCAGTGAAGGTCCCTGATGCACAGTCAGGAGCCAGCTCCCGGGGGCATGTGCACGTCTGTAGACATGAGCCTGCTGTAAACATCAGCTCATCCATGAGCTGGACCAGATGGGAAGGAGGTTCTCTCTCTAACACTGGCATGTCCACTTCTGTCTTCAG
Seq C2 exon
ATTTGACTTGAAGACCTTGCCTGTAGACTTTGTAGAATGTTTGATGAGGTTCTTGCCAACTGAGAATGAGGTGAAAGTGCTTCGGCTCTATGAGCGGGAACGGAAGCCCCTGGAAAACCTGTCGGATGAAGACCGGTTCATGATGCAGTTTAGTAAAATTGAGAGGCTCATGCAGAAGATGACCATCATGGCCTTCATCGGGAACTTCACTGAAAGCATTCAGATGCTGACTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026851:ENSBTAT00000065141:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.096 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(18.3=100)
A:
NA
C2:
PF0218118=FH2=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGGTCCTGCCATTGATC
R:
TGGTCATCTTCTGCATGAGCC
Band lengths:
345-1628
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]