RnoINT0061640 @ rn6
Intron Retention
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38658732-38660801:+
Coord C1 exon
chr3:38658732-38658934
Coord A exon
chr3:38658935-38660566
Coord C2 exon
chr3:38660567-38660801
Length
1632 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
CATGGCTACTCTGGTTTCAGGTT
3' ss Score
8.54
Exon sequences
Seq C1 exon
GATTTAAATGTGGACGAATTCGAGGAAATATTCAAAACAAAAGCACAAGGTCCTGCCATTGATCTTTCTTCAAGCAAGCAGAAAATAACACAGAAGGGATCAAGTAAAGTGACATTATTAGAAGCAAATCGAGCCAAAAACCTTGCCATAACCTTACGGAAAGCGGGAAAGTCCGCTGATGAGATATGTAAAGCTATTCATGT
Seq A exon
GTAAGTTTCCAGGGAACGCTGACCCTAGCAAGCTCAGCTTGAGGGAGAAAATAGGTTTACAAGTCAGCAGAGAACAGAAGCAGTGGGGCAAAACCTAAGCCCAAAGATGGAGGAATTCTTGGTACCCCCACTTTAGAGCTCTCCTTGTTCCTCCTGTGTTATTGCTTTGGAACTCAGATGTTGACACCAAAGCACTGTACCCAGAAGGTACCCAGGGCAGCAACCTGTCATTTGTCAGCTCAGAATGAGCACCTCTGGATCGGGACAGTGTTGTTGTCTTGTTCGGTCATATCTAGAGGCCTCCAGTAGTGCCCACACGAAAGAGCTGCGTGTGTAGATGGCGAGGAGAGGGGGAGATGGCAGCCTTCTCTGGAGGATCCGGAGTGCATCCACACTTGCCGAATCCACATTCGATGGCAACCATTCAATGCCAGTCGTACATGACACAGACGCAGCTCTTAGTTCAGGACAACAGGGATGCGAATTCTTAGTGCTGTCTGGTCATTTTAAACAAGGCTTTTTTTCCCCCAATTTATTTATAAATTGCACAGGAGGTAATGGTTTTGTTCACCTGTTAGAAAAATGTTTCCATCTTCTTGAGGCCAAAGTGATGTTATCGATGTTTTTGGAAATAATTTTTCATAATTTGATATTTTATAGTTTTTGACTGGTGATCTTACCTAACTCTAAGATATCATTTACTCTGATTTTGTGTCTTTAGCCAAAGATATATTCTAATATAGTTTTCTGCAATCTTTTCTGATTTTCAGTATTGAAATGTCTATACAGTCTTGTTTTTAATCTCACAAACCTTGTTTGCCATACTGAGCATAGTTTTCCTTCCTTCCTTCCTTCCTTCCTTACTTCCTTCCTCCCTCTCCTCCCTCTCCTCCTCCCTTCTCATCCCTCCCCTCCCTCTCTCCTTACCTCCCTTCCTTCCTTCTTCCTTCCTTCCCTCCCCCTCACCAACTCTCTGAAGAAAGATTGTCTGGAGAATCCAATAGGAATTAAGCAAATACTTGTTTCAAATTGAGCAAACATCTACCTAGACCTGATCTTCCTTCAAGGAATGTATGTATCTATATCAGAATTATATAGAACAGGACTTTGACCCAGCTTGTCTCTAGAGAAAGCAAAATACTGACAGAAACATTTTACAAAATTCACCAGATGTTCTGTAACTGTGTGGCGGTGATCTCTCTCTCTATCTTTTTTTTTTTTTAAAGATTTATTTATTTACTCTATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATGACAGATGGTTGTGAGCCACCATGTGGTTGGTGGGATTTGAACTCAGGACCTTTGGAAGAGTAGTCAGTGCTCCTAACCACTGAGCCTTCTCTCCAGCCTGGTGGTGATCTCTTTGATTGAATTACTTCACAATTCCTTGGACATACAGATCAGATGTGTTCCAGCATTCAAATTCTGTCTGCTCTTGATTTCTAAAGGCCAAAGCTACCTGGGAACTTGGTCTGGGGTATCAGTTAGGGTAACCAGCACCACACTGGGGCTTCACCAGGACAGCTATCAGAATCCAAAGGTTGGATGGGGGTAGATCACTAACATGGCTACTCTGGTTTCAG
Seq C2 exon
GTTTGATTTGAAGACACTGCCAGTTGACTTTGTTGAATGTTTGATGAGGTTCTTGCCAACTGAGAATGAGGTCAAAGTGCTTCGACTCTACGAGCGAGAGAGGAAGCCCTTGGAGAACTTGTCAGATGAGGACCGCTTCATGATGCAGTTCAGTAAGATTGAGCGGCTCATGCAGAAGATGACCATCATGGCCTTCATTGGGAACTTCACAGAGAGCATTCAGATGCTGACTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567:ENSRNOT00000085545:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(18.3=100)
A:
NA
C2:
PF0218118=FH2=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGCACAAGGTCCTGCCAT
R:
TTCTGCATGAGCCGCTCAATC
Band lengths:
342-1974
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]