MmuINT0065112 @ mm9
Intron Retention
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:52973889-52976108:+
Coord C1 exon
chr2:52973889-52974091
Coord A exon
chr2:52974092-52975873
Coord C2 exon
chr2:52975874-52976108
Length
1782 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
3' ss Seq
CATGGCTACACTGGTTGCAGGTT
3' ss Score
4.95
Exon sequences
Seq C1 exon
GACTTAAATGTGGACGAATTTGAAGAAATATTCAAGACAAAAGCCCAAGGTCCTGCCATTGATCTTTCTTCAAGCAAGCAGAAAATAACACAGAAGGCATCAAGTAAAGTGACATTATTAGAAGCAAATCGAGCCAAAAATCTTGCCATAACTTTAAGGAAAGCTGGGAAGTCTGCGGATGAGATATGTAAAGCTATTCATGT
Seq A exon
GTAAGTTTCCAGCATCCTGGGAAGGTCAATCCGAGCAAGGGCAGCTTAAGGAAGAAAATAGCTTACAAGTCAGCAGAGAACAGAAGTAGTAGTGGGGTAAAATATAAGCATAAAGATGGAGGAACTCTTAGTACCCCCCACTTTAGAGCTCTCCTTGTTCCTCCCGTGGAACTAAGATGTTAACACCAAAGCACTGCACCAGAAGGTGCCCAGGGCAGCATCATATCCACTTGTCATTTGTCAGCTCAGAACAAGAAGGTCTGGATTGGGACAGCGTTACTGTCTTGTTCTGGTTGTGTGGCCCCTTCAACAGGGCCCACATAAAAGAGCTGAGTGGGGCAGATCGGGAAGAAAGGGAGAGATGGCAGGCTTCTCTGGAGGATCTGGAGTGCATCCAGACTTGCTGAGTCCACATTTGATGGCATCTGGGGATAGAGTTCAATGCCAGCCTCAAATGCGATACAGATGCAGCTCTTAGTCGATGACAACAGGAATGTGCATTCTTTGATCTAAGTACTTTCTGGTTATTTTAAACAAGGCTTCTTTTTTTCTTCCAATTTATTTATAAGTTGCACAGGAGGTAATGGCTTTGTTTACCTGTTAGAAAAATCTTGCCAATCTTCTTGTAGCCAAAATGATGTTATTGATGTTTTAGGAAATAATTTTTCATAATTTGATGCTTTATAGTTTTTGACTGATGATCTTACCTAACTCTAAGAAATTATTTGCTCTGATTTTTTTGTGTCTCTAGTCAAAGACATAATCTAATATAGTCTTCTGCAATCTTCTGTGATTTTCAGTATTGAAATGTTCTATGCAGTCTTGTCTATAATCTCATATACCTCGTTTGCCATACTAGTGAATGGGGATTTCTGTTTGTTTGTTTTTCGTTTTTCTCTTTTCTTTTCCTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTTTTCCTTTCCTTTTTTCCTTTCCTTTTTTCCTTTCCTTTTTTCCTTTCCTTTTTTCCTTTCCTTTTTTCCTTTCCTTTTTTCCTTTCCTTTTTTCCTTTCCTTTTTTCCTTTCCTTTTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCTTTTCCTTTCTTTTCCTTTCCTTTTCTCCCTTCTTTCCCCCCCCCCCTTTCTTTTATTCATAAGGAAAGATTGTCTGGAGAATACAATAGGAATTAAGAAAATACTTGTTTCAAATTGAGCAAATATTTACCTAGACCTGATATTCCTTCAAAGAATGTGCGTACCTACACCAAAATTATCCATATAGAACAGGAATTTGACTGAGTTTGTCTCTAGTGAAAGTAAAATAACGACAGAAACGTTTTATAAAATTCACCAGATGTACTGTAACTGTGAGGTGCTGATCGCTTTGAATGATTTCACAGTCCTGTGGACATGCAGACCAGCCTGTGTTCCAGCATTAAAATTCTGTCTGCTATTCTCTACTCTTGATTTCTAAAGGCCAAAGCTACCTGGGAGCTGTCAGATAAAAGCACTAACAATTTGAGCATGGTCAGGGGCATCAGTTAGGGTAACTGTGCTCAGCTGGGACCATCAGCATGGTGGGACTTCCACAGGACAGCTGTCAGGATAGAATGCAAGGCCTGCTGTCTTAGCAGAAGATGAGCTGGGTTGGTAGATCACTGACATGGCTACACTGGTTGCAG
Seq C2 exon
GTTTGACTTGAAGACGCTACCGGTTGACTTTGTTGAGTGTTTGATGAGGTTCTTGCCAACTGAGAATGAGGTCAAAGTGCTTCGGCTGTATGAGCGAGAGAGGAAGCCCTTGGAGAACTTGTCAGACGAGGACCGTTTCATGATGCAGTTCAGTAAGATTGAGCGGCTGCTGCAGAAGATGACCATCATGGCCTTCATTGGGAACTTCACAGAGAGCATTCAGATGCTGACTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053-Fmnl2:NM_172409:17
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.064 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(18.3=100)
A:
NA
C2:
PF0218118=FH2=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGGTCCTGCCATTGATC
R:
ATGGTCATCTTCTGCAGCAGC
Band lengths:
346-2128
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: