RnoINT0061615 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91277336-91278182:+
Coord C1 exon
chr10:91277336-91277538
Coord A exon
chr10:91277539-91277947
Coord C2 exon
chr10:91277948-91278182
Length
409 bp
Sequences
Splice sites
5' ss Seq
GACGTGAGT
5' ss Score
9.22
3' ss Seq
TCTCCCGTTTCCTTATGCAGGTA
3' ss Score
11.53
Exon sequences
Seq C1 exon
GAGTTAGACATGAATGACTTTGAGGAGCAGTTTAAGACCAAATCCCAAGGCCCCAGCCTGGACATCAGCGCTCTGAAGGGGAAGACAGCCCACAAAGCCCCAACTAAGGCAACCCTCATTGAAGCCAACAGGGCCAAGAATTTGGCCATCACCCTGCGCAAGGGCAACCTAGGAGCTGACAGAATCTGCGAGGCCATTGAGAC
Seq A exon
GTGAGTACCTGTGCTGGGATGTGGCCCAAGTCCCCTCACTAGGCAAGGATCATTAGGCAGAGTGTGGTAAGAATCCCAGCAGTGGGACAGAGTCCATCAGACCTCATACCAGTCCTGGTCAGACCAAGACAACTGAGACTGTACTCTGAGTCCATGCCCTGATTGAGGCCTCCTGACTCTTTTCCTGCTTCTGCCCAGCATGGGCACTCAAGCCAAAGGATTCATAGTTGTATATCTGCCAGTGTTATATGACAGAACTGGGGCTTTCGGTGTGCTCGACTCCTCTCTCTTGTTCTCTGAAGCGGTCTACGGATACTAAATATGGGAGGTTGTTTATTCGGTATTCAGTCCCGTTCTTCTGGAACTTGTAAGTGTGGAACGACACTCACTCTCCCGTTTCCTTATGCAG
Seq C2 exon
GTATGACCTCCAGACTCTCAGCCTGGATTTCTTGGAGCTGTTGACCCGCTTCCTGCCCACAGACTACGAGCGTAGCCTCATAGCCCGATTTGAGAAGGAGCAGCGGCCAATGGAAGAGCTGTCAGAGGAGGACCGCTTCATGCTGCGCTTCAGTCGCATCCAGAGGCTTCCAGAGCGAATGAATACACTCACCTTCCTGGGCAACTTTCCAGACACGGCCCAGCTGCTCATGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.013
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(18.3=100)
A:
NA
C2:
PF0218118=FH2=FE(21.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGAAGGGGAAGACAGCCC
R:
CTGGAAAGTTGCCCAGGAAGG
Band lengths:
345-754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]