BtaINT0063164 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004196 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr19:45504692-45505595:+
Coord C1 exon
chr19:45504692-45504805
Coord A exon
chr19:45504806-45505521
Coord C2 exon
chr19:45505522-45505595
Length
716 bp
Sequences
Splice sites
5' ss Seq
GGGGTATTT
5' ss Score
3.64
3' ss Seq
CCCCTGTGTTTGGCTCCCAGTTT
3' ss Score
8.22
Exon sequences
Seq C1 exon
GAGCGGTTTCAAGTCAAGAACCCCCCAGCAGCCTATATCCAGAAGCTGAAGAGCTACCTGGAAACCGGTGGGGTCAGCCGAAAAGTAGCAGCAGACTGGATGCCCAACCTTGGG
Seq A exon
GTATTTATCCCCCTCTTTCTCTCTGTCCCTTTCCCCCGCACTTTGCAAGCCCTGGGGCAGCTGGAGGAACTGTGCGTGTGAACTCTTCTGCAGGCCTGTGTGGGTACACGGATGAGGGTGTGTATGCAAGTGCCCTGGGTGTCGACTTTTATGGGTTCCTCTGCAGTTCCTGTTTGTGCTCTGATGTATACACTTGTATGTATTTGTGTAGTGTATATGTACACGTGTGCACACTATGTGCGCAGGCGTGGATGTGTGTGTGTATTATGTGTGCCCTTTTGTGTCCACATATGGATGTATGTGTATCGAGTCCTTAAACAAGGGTGTGTGTGTGTGTACCTCGTGTGTCTGTATGTGGATTTGTATCTTATGTCTGTGTACTCCCTGTACTTGTGTATGGGTGTGCACATGTGCGTGGATACCCAGGGTGTTCATGTTTGAATGTGTGCATATCCTTTGTCCGCATGTATGTGTGTGTGTGTGTGTAAGGAGGCATTGGTGTGCCTCTTTTGTGTCTGCCCATGGCCGTGTGGTGTACACCCTGTGTGTGTGTGTAGGGGGAGTACGTGTGGCCTGAGAATGCTTATTCTGCCAGGCAGTTGTGTGGAGGTGGTGGGGGCGGCTGAGCGTGAAAGGCCAGTTGTCGGGGGCGGGCAGGCCCTGTTGGCTGAGGCCCGGGCCCCACCCACCAGAGTCCCCCTGTGTTTGGCTCCCAG
Seq C2 exon
TTTAAGAGGCGAGTTCAGGAGTCCACGCAGGTGCTCCGGGAATTGGAGATCTCTTTGAGGACCAACCACATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004196:ENSBTAT00000034825:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(25.3=100)
A:
NA
C2:
PF063718=Drf_GBD=FE(16.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTTTCAAGTCAAGAACCC
R:
TGTGGTTGGTCCTCAAAGAGA
Band lengths:
182-898
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development