HsaINT0065115 @ hg19
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:1212]
Coordinates
chr17:43309734-43310664:+
Coord C1 exon
chr17:43309734-43309847
Coord A exon
chr17:43309848-43310590
Coord C2 exon
chr17:43310591-43310664
Length
743 bp
Sequences
Splice sites
5' ss Seq
GGGGTACAT
5' ss Score
1.77
3' ss Seq
TCCCTGTTCTCGGTCCCCAGTTT
3' ss Score
9.27
Exon sequences
Seq C1 exon
GAGCGGTTTCAAGTCAAGAATCCCCCCGCAGCCTACATCCAGAAGCTGAAGAGCTATGTGGATACTGGTGGGGTCAGCCGAAAGGTAGCAGCTGATTGGATGTCCAACCTGGGG
Seq A exon
GTACATGTCTCCCCTCTTTACTCTGTCCCTTTCCCCCACATTTTCCAAGCTCTGGGCAGCTGGAGTAACTGTGTGTACAGACTTTTCTATGTGCGTGTGTGGGTGCATGTATGAGTGTGTGTGTGTGTTTGTGTGTCTGTGTATTTATAGGGGAATGAGAGTGCCCTGGGTGTGCACTTTAGATATTCCTCTGTACATCCTGTGTGTGCTTACATGGACACATTCTGTGTACTTATACTGTGTGTATACACATGTGCAGCCCATATGTCCATACATAGGTGTGTGTGTATACTATGTGTGTACTTTGTCCACTTATGGATGTGTGTGTGTACCATTGAGTCCATATCTAGGAGAGAGAGAGAATGTGTGTGTGTGTGTGTCCATGTATGGATGTGTGGATATTCTATGTCTGTATTTAGAGTGCAGGTATATGGATGTTCATGTGCTGTGTGTGTGTGTGCGCACACACACTCTGCCTCTTTGTGTGTGTGCATGTGTATACCTTGTGTGCCCATGTATCGGGGGTGTGTGTACCCTGCTTGTCTATGTATGGGGGAGCACATGTAGCCTGTGAGTTCTTATTCTGCTGGGCAGGTGTGTGGAGGTGGTGGGGGAGGCTGAGCATGAAAGGCCACTTGTGCCAGTTGGAGGAGGGTGGGCGCTGCTGCCTGCTGCCTCAGGACTTGGTGGGCCTGTGGGAGGCCGGGCTCCACCCACCAGCCTTCCCTGTTCTCGGTCCCCAG
Seq C2 exon
TTTAAGAGGCGAGTTCAGGAGTCCACGCAGGTGCTACGGGAGCTGGAGACCTCCCTGAGGACCAACCACATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922-FMNL1:NM_005892:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(25.2=100)
A:
NA
C2:
PF063718=Drf_GBD=FE(16.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTTTCAAGTCAAGAATCCC
R:
AATGTGGTTGGTCCTCAGGGA
Band lengths:
184-927
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)