RnoINT0061626 @ rn6
Intron Retention
Gene
ENSRNOG00000003207 | Fmnl1
Description
formin-like 1 [Source:RGD Symbol;Acc:1311042]
Coordinates
chr10:91263926-91264738:+
Coord C1 exon
chr10:91263926-91264039
Coord A exon
chr10:91264040-91264664
Coord C2 exon
chr10:91264665-91264738
Length
625 bp
Sequences
Splice sites
5' ss Seq
GGGGTATAT
5' ss Score
2.46
3' ss Seq
CTTGTTTTTTTGGCCCCCAGTTT
3' ss Score
8.09
Exon sequences
Seq C1 exon
GAGCGGTTTCAAGTCAAGAATCCCCCTGCAGCCTACATTCAGAAGCTGAAGAGCTACTTAGATACCGGTGGGGTCAGCCGAAAGGTAGCAACTGATTGGATGTCCAACCTGGGG
Seq A exon
GTATATATATCTCCCTTCTTACATGTGCTTACATGAGCATTCCCATGTGTGTGTGTGTATTGCGTGTATACATATGTACACCCTGTGTATTCATGCACAGACATATGTGTTCGGTAGGTGTGTATGCTTTGGGGTTTTGTAGTATATTTGTACTCGTGTATCCCTGAGTCCATACATAGGAGAAAGAGAGGAAGAAAAAAAAATGGATGTATACGTGTGTATCCCATATACAAGCAAATGGGTATGTAGGTAGGCACCCCGTATGTGCATATTTGGGGTCTCCTGTGTGGATGTGCATGCTGTGTTCAATGTGTGCATGCCCAGTATGTCTGTGTAGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATACTGGATCGCTGTATAGAGGTATGTCTGTGCACCCTGTATCTTCAGACACATGTGGATATACCCTCTATGTTGGGGGAAGGCATGAAGTGTTCATTCTGTTGCACAGGTGTGTGGAGGTGGTGGGGGAAGCTAAACGTGAAAGGCCTTGAATGCATGCTGGGGGTGGATACTTCTGGCCGATGCCTCAGGACGGTAGGAGTCTGGGTTCCACCCTCAGACTCCTTGTTTTTTTGGCCCCCAG
Seq C2 exon
TTTAAGAGGCGAGTTCAGGAGTCTACTCAGGTGCTGCGGGAGCTGGAGACCTCCCTGAGGACAAACCACATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003207:ENSRNOT00000065373:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.080
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(25.0=100)
A:
NA
C2:
PF063718=Drf_GBD=FE(16.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTTTCAAGTCAAGAATCCC
R:
ATGTGGTTTGTCCTCAGGGAG
Band lengths:
183-808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]