DreINT0069057 @ danRer10
Intron Retention
Gene
ENSDARG00000055713 | fmnl1a
Description
formin-like 1a [Source:ZFIN;Acc:ZDB-GENE-120215-83]
Coordinates
chr3:37065637-37065989:+
Coord C1 exon
chr3:37065637-37065723
Coord A exon
chr3:37065724-37065915
Coord C2 exon
chr3:37065916-37065989
Length
192 bp
Sequences
Splice sites
5' ss Seq
AGGGTCAGT
5' ss Score
5.85
3' ss Seq
CTGCGGGTCTTTCTCCACAGTTC
3' ss Score
10.23
Exon sequences
Seq C1 exon
GAGCGATTTCAGGTGAAAAACCCTCCTTCAGCTTACCTCACTAAAATCAAGAGCTTCTACCAGGACCAGGGTGGAGTCACACGCAGG
Seq A exon
GTCAGTGCCATCTCTCTTTGTCCTTTCTTTTCCTCTCCACTTTCCTACACTGTCATTCTCTTTTACCTCTTGTCATTTCTGACACCCACCTGTGGAAAAATCCCAGATGAAAGCTTTTGTTGAGAGGTGAATGATTGTCTGTCAGTCGGTTAGCGGTTAGCTTACTGTATCTCTGCGGGTCTTTCTCCACAG
Seq C2 exon
TTCAAGAAACGTGTGCAGGAGTCAACTCAAGTCCTGAGAGAGCTGGAAATATCGCTGAGAACCAATCACATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055713:ENSDART00000151144:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.160
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=FE(20.6=100)
A:
NA
C2:
PF063718=Drf_GBD=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGAAAAACCCTCCTTCAGCT
R:
CAATGTGATTGGTTCTCAGCGA
Band lengths:
149-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]