BtaINT0063170 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004196 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr19:45510421-45511491:+
Coord C1 exon
chr19:45510421-45510514
Coord A exon
chr19:45510515-45511416
Coord C2 exon
chr19:45511417-45511491
Length
902 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
CAGCCATTCCTCCCACCCAGGTA
3' ss Score
6.92
Exon sequences
Seq C1 exon
AACCAAGGCTCTGGTGTTGGAGCTGCTGGCGGCTGTTTGCCTGGTGCGGGGAGGACACGATATCATCCTTTCCGCCTTTGACAACTTCAAGGAG
Seq A exon
GTAATGGAGCCCCCACCTAACATGTACTTGCATGGAGCCCTGTTGCTGGCAGGTATAGCCTCTGCTGGGGGCAGCTAGAGATGCTGGGTAGGTTTTGGGGGGGGTGCTGGGTAGGTATTTGGGGGGGTGGTTTCCTCATCTAACGGGAAGGTACAGGGTCACACAGGGGCACTGTCCAGGGTGACAGGGACAACTACGGGGACTTGCTGAACCTCTGACCTTCAGTTTTGCCAGATCCAAACTGGCCTTGATCCATACATCTCAGAGTCACCGACTCTGGTTAACAGGCTCATGAGAAGTAGCTGCATGAGAGTGTGATGCATAAGGCAGCATACGGTCATGCATTCCTTGAATGGATATTTATCGAGGGCCCGCTATGTGTCGGGCACAGAGTGGGCAGTTGGGGTACATCAGTGAACAAAAGAAACAAAGGAGGCAGGGGAAGACAGATACAATAAATGGCAAATTATACAGTGTCAGAGAATGATAAATATTCTGGGGGAAAAAAGCCAGGGAGGCTGTAGAGGGAGGGGGAACTGGGAGGTTGCCGGGTAGTCAGGGAAGCCTCATGGAGAAGGTGAGATGTGAGCAAAGCTGGGAGGGGAGTGAGGGATTTGTGTGGTGGCTGTCTTCAGTAAGAGCTCATCAGGCAGGTGGAATAGCAAGTGCAAAGGCCCTGAGGTAGGAATGTACTAGGATGCCAGAGTGGCCAGAATGGAGTCAGTGTTGGGGAGGGCTGTGAGAGATCAAGAGGGGCGAGAGGTTTTGAGCAGAAGAATGATGTGGCCTGACTTAGATTTAATTTGAGAGGAGCCCATAGAGGCATAAGGGGGTGGGCAGCTGGAAGACGGCTTAGGTGGTATGTCCCTGGGACCTCAGTGACAGCCATTCCTCCCACCCAG
Seq C2 exon
GTATGTGGAGAGCAGCACCGCTTTGAAAAGCTAATGGAATATTTCCGGAATGAGGACAGCAACATCGACTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004196:ENSBTAT00000034825:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(17.5=43.8),PF0636711=Drf_FH3=PU(7.6=43.8)
A:
NA
C2:
PF0636711=Drf_FH3=FE(13.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development