HsaINT0065121 @ hg38
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin like 1 [Source:HGNC Symbol;Acc:HGNC:1212]
Coordinates
chr17:45237546-45238638:+
Coord C1 exon
chr17:45237546-45237639
Coord A exon
chr17:45237640-45238563
Coord C2 exon
chr17:45238564-45238638
Length
924 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCG
5' ss Score
8.5
3' ss Seq
GAGCCATTCCCCTTACCCAGGTG
3' ss Score
5.98
Exon sequences
Seq C1 exon
AACCAAGGCTCTGGTGCTGGAGCTGCTGGCGGCCGTGTGCTTGGTGCGGGGAGGACATGACATCATCCTTGCAGCCTTTGACAACTTCAAGGAG
Seq A exon
GTACCGGAGTCCCTCACCCAAACATGCATTTCCCCCTATGGTGTTGCTTGGAGTCTTGTTGTTGGCAGTTGTGGCCTTTGCTGGAGGCAGCTGGGGACATTGGGTGGGCATTTGGGGAACGCCCAAAAGTTGAAGTTGAGCCACATCACTGGCTCAGCAATCTGGGATGGGGAAGTTCTGAATGGAAGGTACAGGGTCAGGTAAGGGCACCACCTGGGTGGGGGTAGGGACAACTACAGGGACCTGCTGAACCTCTGACTCAGCCTTGCCAGATCCAAACTAGCCTTGGTTCATACCTCCAGGAGTTGCGGACTCTGGCTAACAGGCTTGCAAGAAGTAGATGTGTGGGGCTGCATAAGATGCATAAGACAAGATATCTTCATTCATTCATTCCTTTAATGAATATTTATTGAGTGCCTACTATGTGTCAGGAACAGGGCACTTGGGCACATCAGTGAACAAAGGAAACCATATAGGGAAAGACAGAAACGATATAATAAACAAGCAAATTACATAGTATGTTAGGAAATGATAAATGCTGTGAGAAAAAAGCCAGCAATGTTGCAGAGGGAGGGGGAATTGGTTGCAGGGTGGTCAGGGAAGGCCTCACTGAGCAAGTGAGATTTCAGCAAAGCTGTGAAGGAAGCAAGGGACTTGGTGTGGGAGTGAGGGCACTCCAGGGAGTTGGAACAGTAAGTGCAAAGGCCCTGGGGTGGGAATGTGCCAGGATGCCAGTGTGGCCAGAGTGGAAAAAGTGAGGGAGAGTGGGAGATTGAGAGGGAGTGGAGGTTTTGAGCAGAAGAGTGACGTGGCTCAACTTAGAATTAACTGGAGAGGAGCCTGTTGAAGCACAGGTGTGGCAGCCAGAAGGTAGCTTAGGACGTGTGTCACTGGGCCTCAGTGAGAGCCATTCCCCTTACCCAG
Seq C2 exon
GTGTGTGGGGAGCAGCACCGCTTTGAAAAGCTGATGGAATATTTCCGGAATGAGGACAGCAACATCGACTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922:ENST00000331495:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.006
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(17.5=43.8),PF0636711=Drf_FH3=PU(8.3=43.8)
A:
NA
C2:
PF0636711=Drf_FH3=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development