HsaINT0065121 @ hg19
Intron Retention
Gene
ENSG00000184922 | FMNL1
Description
formin-like 1 [Source:HGNC Symbol;Acc:1212]
Coordinates
chr17:43314913-43316005:+
Coord C1 exon
chr17:43314913-43315006
Coord A exon
chr17:43315007-43315930
Coord C2 exon
chr17:43315931-43316005
Length
924 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCG
5' ss Score
8.5
3' ss Seq
GAGCCATTCCCCTTACCCAGGTG
3' ss Score
5.98
Exon sequences
Seq C1 exon
AACCAAGGCTCTGGTGCTGGAGCTGCTGGCGGCCGTGTGCTTGGTGCGGGGAGGACATGACATCATCCTTGCAGCCTTTGACAACTTCAAGGAG
Seq A exon
GTACCGGAGTCCCTCACCCAAACATGCATTTCCCCCTATGGTGTTGCTTGGAGTCTTGTTGTTGGCAGTTGTGGCCTTTGCTGGAGGCAGCTGGGGACATTGGGTGGGCATTTGGGGAACGCCCAAAAGTTGAAGTTGAGCCACATCACTGGCTCAGCAATCTGGGATGGGGAAGTTCTGAATGGAAGGTACAGGGTCAGGTAAGGGCACCACCTGGGTGGGGGTAGGGACAACTACAGGGACCTGCTGAACCTCTGACTCAGCCTTGCCAGATCCAAACTAGCCTTGGTTCATACCTCCAGGAGTTGCGGACTCTGGCTAACAGGCTTGCAAGAAGTAGATGTGTGGGGCTGCATAAGATGCATAAGACAAGATATCTTCATTCATTCATTCCTTTAATGAATATTTATTGAGTGCCTACTATGTGTCAGGAACAGGGCACTTGGGCACATCAGTGAACAAAGGAAACCATATAGGGAAAGACAGAAACGATATAATAAACAAGCAAATTACATAGTATGTTAGGAAATGATAAATGCTGTGAGAAAAAAGCCAGCAATGTTGCAGAGGGAGGGGGAATTGGTTGCAGGGTGGTCAGGGAAGGCCTCACTGAGCAAGTGAGATTTCAGCAAAGCTGTGAAGGAAGCAAGGGACTTGGTGTGGGAGTGAGGGCACTCCAGGGAGTTGGAACAGTAAGTGCAAAGGCCCTGGGGTGGGAATGTGCCAGGATGCCAGTGTGGCCAGAGTGGAAAAAGTGAGGGAGAGTGGGAGATTGAGAGGGAGTGGAGGTTTTGAGCAGAAGAGTGACGTGGCTCAACTTAGAATTAACTGGAGAGGAGCCTGTTGAAGCACAGGTGTGGCAGCCAGAAGGTAGCTTAGGACGTGTGTCACTGGGCCTCAGTGAGAGCCATTCCCCTTACCCAG
Seq C2 exon
GTGTGTGGGGAGCAGCACCGCTTTGAAAAGCTGATGGAATATTTCCGGAATGAGGACAGCAACATCGACTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184922-FMNL1:NM_005892:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(17.5=43.8),PF0636711=Drf_FH3=PU(8.3=43.8)
A:
NA
C2:
PF0636711=Drf_FH3=FE(14.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)