DreINT0069063 @ danRer10
Intron Retention
Gene
ENSDARG00000055713 | fmnl1a
Description
formin-like 1a [Source:ZFIN;Acc:ZDB-GENE-120215-83]
Coordinates
chr3:37072738-37074567:+
Coord C1 exon
chr3:37072738-37072831
Coord A exon
chr3:37072832-37074492
Coord C2 exon
chr3:37074493-37074567
Length
1661 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGA
5' ss Score
5.46
3' ss Seq
TAACATTCACTTTCTTACAGGCT
3' ss Score
8.43
Exon sequences
Seq C1 exon
GACTAAAGCTCTCGTCTTGGAGCTGTTGGCAGCAGTGTGTTTGGTTAGAGGAGGCCATGACATCATCATATCAGCTTTTGACAACTTTAAAGAT
Seq A exon
GTAAGATGACTAGCATTTCACGTATGTGCATGCATTAAAACATTTAAGATGTACTCATATTTTTTTTCGTACCCGGTACCAGGTCCGTGAAATATCATTTACATCCAAATTCTTTTAAATTTAAAGGTCCTTACTGGCCCATTACCACCATAAGAGGTTCCGTTCTCTCATCAGTTGGAATAGAAAAGTGTTTGCACAGATTATGATAGACATTTTTCTTTTATCCTATGATTACTGACTAAATTATTTACAGCAACCAAGACCACACAGAATCTAAAAGTAACACTTTCAAATATGAGTTTACAAAAAAAGAGTGTTTTTTAGAGGGGGTTTTATAACACAGACAACATATACAATTATTTTAATAACTTTCAAAATGTGAAAAAAATGTGAATTTAAAGGGTTTTCTTTAAAATGATACCAAACTTTTTCATTTACACCTCTGCATGTGGATCTGGGAAGCTTTTGAATTTAAGTAGGCAAAATCCAGGCGGAAAGATCAAATTAGTACTTGACTTCAGGTAGATAAAAGACATATTAAGATAAATAATATCAAAATATCATTCATTTAAACTGTTGAAATATTTTGTTTTCATCTTGCACCTTCACTCAGTATATTAATGAAATAATCCATGTATTACCATTCAAAAGATGAGGGTTTAACATAGATTCTCGCAAATAAATCTTTTATCTTAATCAAGGATGCATTAATGCATTTTTGATATACATTATTCTTTCTGAACCTATTTGAAAATGTAATTTTAAATATTTTATTCGTGTGATGTAAAATGTAGGGATTATCAATGTTAAAACAGCTGCTCCCTATTTCATTTACACTCTTAAAAAGAACCAAAAAGTGGTTTTGGTTACACTTTCTTTTAAGGTGTCTTCCTTACTGTAACTATTCATTTAACTACCAAATAACAGTAAATAATTATACATATTTACTCTATAGTCATAATAAGTATGCAGGTTAGGTTTATTTACAAGTCATTAAGCATACTTTATTGTAGTTATTATAGTAATTACATGTAACATATATAAAAAGGCTGTGTTAAAATAAAGTGTTACTTGTGCTTTACAGTATGTGATGCCATAGAAGAAGCTTTTTTCAGTTCCTCAGAGAACCCTACAGTCAAATAACCTTTTCTAGTAAACATTTAGAGAATGATTGGTTTCTATAGATATTGAAGTTTGTTACCCATCAGTGGCAATAAAGCAACTTTTAAAATAACTATTATTATTGTGTTTTTTCCCAGTACTGGGTTGCAGCTGGAAGGGCATCCGCTGTGTAAAACATATGGTGGATAAGTTGGCAGTTCATTCCTCTGTGGCGACCCCTGATAAATACAGGGACTAAGCCGAAGGAAAATTAATGAATAATGTGTTGTCCTACCACTTTTTTTCCTTGGTATTTTTTGACGACTGAAAAATTCAAGCATTTGCTTGACAGAAACCACATGTTAAAAATCTTTTAACCAAGCAACTAATTTTGCCCTCATTGACTTAATTAAAATCTTTCTGACCTCAAAGTTTTGACCAGATGATACACAAATGATGCTACTAAAACCACACACAAATCTTCTATACTCAAGACTCACATAAACATTTCTGCAGCATACAATATTTTTCACATTCACATAACATTCACTTTCTTACAG
Seq C2 exon
GCTAGTGGAGAGAAGAACCGCTTTGAGAAGCTCATGGAGTACTTCATGCATGACGACAGCAACGTGGACTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000055713:ENSDART00000151144:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF063718=Drf_GBD=PD(17.1=43.8),PF0636711=Drf_FH3=PU(7.1=43.8)
A:
NA
C2:
PF0636711=Drf_FH3=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]