BtaINT0063191 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016593 | FMNL3
Description
formin-like 3 [Source:HGNC Symbol;Acc:HGNC:23698]
Coordinates
chr5:30365577-30366350:+
Coord C1 exon
chr5:30365577-30365856
Coord A exon
chr5:30365857-30366281
Coord C2 exon
chr5:30366282-30366350
Length
425 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TGCCATTTCTTCTCCCCCAGACA
3' ss Score
10
Exon sequences
Seq C1 exon
GAGACTTACGAGAACACAAGCCACCAGGTACACACCCTGCGGCGGCTCATTAAAGAGAAAGAGGAGGCCTTCCAGCGCCGGTGCCACTTGGAGCCCAGTGCCCGGGGCCTGGAGTCCATGGGCAGCGAGGCTCTGGCCCGGGTGGGCTCTGCGGAGCTGAATGAGGGCATGCCCCACTCCGACCTGGACCTCCTCACTCTGGCCCCCCCTGCTGAGGAGGCCCTGCCCCTGCCTCCACCGCCAGCTCCTCCCTTGCCCCCGCCTCCTCCCCCGTTACCAG
Seq A exon
GTAAGCAGAACCTTTACCTGGTAAAAGCCAAGAGGTGCAGCCTTATTGTGAGGTCACAGGGGATGTGCTCGAAGGATGTAAAGTCAGATGGGAGGGGCTGGGGGAGGGTTGGGATCTGAGGGATGCTCAGGTTACTAGGGAAGGGATTCTAAGAGTAGGTGTGGATCTGTTTTAAGGAGCATAAAGATGCTGCTTCTGATTCCTCTGAAGACATTCAAGGAGAGGGCTTAGACTAAAGCAGGAAAGAGTGGGTCAGAGACCAGCACCACCACCCCTGGGACCCCTGGGAGTCGGAGTCAGAACCCCTGGGAGCCGCTTGGGCAGGGAGTTCATGCAGCCTGCTCTCCTGAAAGTCTTTAAGGACAGGTAGGCGAGCAGAGGGGTCTCTTGGCCCTTGAGTCACTGTGCCATTTCTTCTCCCCCAG
Seq C2 exon
ACAAGTGTCCCCCGGCCCCGCCGCTCCCTGGCGCTGCCCCCTCTGTGGTGTTGACAGTAGGGCTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016593:ENSBTAT00000022075:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.894 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=PD(18.6=39.4),PF061486=COG2=PD(30.1=46.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTACGAGAACACAAGCCACC
R:
CAGCCCTACTGTCAACACCAC
Band lengths:
342-767
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]